# Effect of liver biopsy size on MASLD fibrosis assessment by second-harmonic generation/two-photon excitation fluorescence microscopy

**Authors:** Daniel T. Field, Yayun Ren, Kutbuddin Akbary, Elaine Chng, Dean Tai, Nikolai V. Naoumov, David E. Kleiner, Jonathan A. Fallowfield, Timothy J. Kendall, Arun J. Sanyal

PMC · DOI: 10.1016/j.jhepr.2025.101449 · JHEP Reports · 2025-05-08

## TL;DR

This study shows that longer and wider liver biopsies improve the accuracy of AI-based fibrosis assessment in MASLD using SHG/TPEF microscopy.

## Contribution

The study is the first to evaluate how biopsy size and position affect SHG/TPEF-based fibrosis assessment in MASLD.

## Key findings

- Longer (>20 mm) and wider (>0.9 mm) biopsies provide more accurate fibrosis assessments using SHG/TPEF.
- Biopsy position within the tissue does not significantly affect AI-automated fibrosis measurements.
- Shorter biopsies still show high concordance with established fibrosis assessment methods.

## Abstract

Fibrosis in metabolic dysfunction-associated steatotic liver disease (MASLD) is a prognostic indicator and clinical trial efficacy endpoint. Second-harmonic generation/two-photon excitation fluorescence (SHG/TPEF) microscopy images unstained tissue sections and, when integrated with artificial intelligence models, generates a continuous fibrosis value (qFibrosis) and ordinal qFibrosis stage. The impact of biopsy size and location on the accuracy of these approaches has not been assessed in MASLD, leaving quality assurance procedures undefined.

One unstained section each from 100 hepatectomy/explant MASLD cases, 20 of each pathologist-assigned Non-alcoholic Steatohepatitis Clinical Research Network (NASH-CRN) fibrosis stage (F0–F4), were used to create virtual core biopsies by cropping regions from within the whole parent section. Regions varied in length (5–30 mm) with a fixed width of 0.9 mm, width (0.5–1.3 mm) with a fixed length of 15 mm, or position within the whole parent section. SHG/TPEF was used, and the qFibrosis continuous value and stage of the virtual core biopsies were determined for comparison with those of the whole parent section.

The qFibrosis continuous value and stage correlated strongly with pathologist-assigned NASH-CRN stage (rs = 0.92). Increasing the length and width of virtual biopsies increased the correlation between the qFibrosis continuous value and the agreement with the qFibrosis stage of the whole parent section, stabilising between 20–26 mm in length and 0.9 mm in width. The position within the tissue did not influence qFibrosis metrics.

Longer (>20 mm) and wider (>0.9 mm) biopsies provide more accurate fibrosis assessment using SHG/TPEF. Biopsy position and orientation do not influence accuracy.

Fibrosis assessment is an important prognostic indicator and clinical trial endpoint in metabolic dysfunction-associated steatotic liver disease, but liver biopsy sampling variation quality assurance has not been investigated for second-harmonic generation/two-photon excitation fluorescence (SHG/TPEF) microscopy quantification of fibrosis. Longer (>20 mm) and wider (>0.9 mm) biopsies allow for more accurate digital assessment of fibrosis. Clinical trials should incorporate suitable protocols to verify biopsy sizes that optimise digital fibrosis assessment using SHG/TPEF.

Image 1

•AI-automated fibrosis measurement using SHG/TPEF microscopy provides a precise assessment of fibrosis severity in MASLD.•Longer and wider biopsies yield more accurate AI-automated fibrosis scores.•Shorter biopsies still demonstrate high concordance with established fibrosis assessment methods.•The biopsy location within the tissue does not significantly affect the AI-automated fibrosis measurement.

AI-automated fibrosis measurement using SHG/TPEF microscopy provides a precise assessment of fibrosis severity in MASLD.

Longer and wider biopsies yield more accurate AI-automated fibrosis scores.

Shorter biopsies still demonstrate high concordance with established fibrosis assessment methods.

The biopsy location within the tissue does not significantly affect the AI-automated fibrosis measurement.

## Linked entities

- **Diseases:** metabolic dysfunction-associated steatotic liver disease (MONDO:0013209), non-alcoholic steatohepatitis (MONDO:0007027)

## Full-text entities

- **Diseases:** MASLD (MESH:D008107), Non-alcoholic Steatohepatitis (MESH:D005235), Fibrosis (MESH:D005355)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12260414/full.md

## References

33 references — full list in the complete paper: https://tomesphere.com/paper/PMC12260414/full.md

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Source: https://tomesphere.com/paper/PMC12260414