# Integrated Metabolomic and Gut Microbiome Profiles Reveal Postmortem Biomarkers of Fatal Anaphylaxis

**Authors:** Yaqin Bai, Zhanpeng Li, Zheng Chen, Li Luo, Jiaqi Wang, Shangman Yao, Keming Yun, Cairong Gao, Xiangjie Guo

PMC · DOI: 10.3390/ijms26136292 · International Journal of Molecular Sciences · 2025-06-29

## TL;DR

This study identifies potential postmortem biomarkers for fatal anaphylaxis using metabolomic and gut microbiome profiles in rat models and forensic samples.

## Contribution

The study introduces novel metabolomic and microbial biomarkers for distinguishing fatal anaphylaxis from other causes of death.

## Key findings

- Three metabolites and three microbial genera were identified as potential biomarkers for anaphylaxis.
- The plasma metabolite classification model outperformed other diagnostic methods like serum IgE and tryptase.
- Tryptophan showed better stability and diagnostic performance in postmortem samples compared to existing markers.

## Abstract

The incidence of fatal anaphylaxis is increasing, but there is still no recognized “golden standard” for forensic diagnosis. Due to its non-specific symptoms, especially cardiovascular symptoms without cutaneous changes, it can easily be misdiagnosed as acute myocardial infarction. Here, we established rat models (n = 12) of fatal anaphylaxis (FA), acute myocardial infarction (AMI), and coronary atherosclerosis with anaphylaxis (CAA). The untargeted metabolomics of plasma and 16S rRNA sequencing of fecal matter was performed, and a random forest was used to identify potential biomarkers. Three metabolites (tryptophan, trans-3-indole acrylic acid, and imidazole acetic acid) and three microbial genera (g_Prevotellaceae_Ga6A1_group, g_UCG_008, and g_Eubacterium_hallii_group) were identified as potential biomarkers for distinguishing anaphylaxis and non-anaphylaxis. The classification model of plasma metabolites showed a much better discriminatory performance than that of microbial genus, serum IgE, and tryptase. The performance of the microbial genera was superior to the serum IgE but inferior to the serum tryptase. Forensic samples of fatal anaphylaxis and non-anaphylaxis deaths (n = 12) were collected for untargeted metabolomics detection. The results showed that among the three identified metabolic biomarkers, tryptophan has better stability in cadaveric blood samples. Its diagnostic performance (AUC = 87.1528) was superior to serum IgE and tryptase, making it more suitable as a postmortem biomarker of fatal anaphylaxis.

## Linked entities

- **Chemicals:** tryptophan (PubChem CID 1148), trans-3-indole acrylic acid (PubChem CID 5375048), imidazole acetic acid (PubChem CID 96215)
- **Diseases:** acute myocardial infarction (MONDO:0004781), coronary atherosclerosis (MONDO:0021661)
- **Species:** Rattus norvegicus (taxon 10116)

## Full-text entities

- **Diseases:** CAA (MESH:D003324), AMI (MESH:D009203), Anaphylaxis (MESH:D000707)
- **Chemicals:** tryptophan (MESH:D014364), trans-3-indole acrylic acid (MESH:C001446), imidazole acetic acid (MESH:C005954)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Eubacterium (genus) [taxon 1730]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12249648/full.md

## References

72 references — full list in the complete paper: https://tomesphere.com/paper/PMC12249648/full.md

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Source: https://tomesphere.com/paper/PMC12249648