# Novel Derivatives of 3-Amino-4-hydroxy-benzenesulfonamide: Synthesis, Binding to Carbonic Anhydrases, and Activity in Cancer Cell 2D and 3D Cultures

**Authors:** Valdas Vainauskas, Rugilė Norvaišaitė, Birutė Grybaitė, Rita Vaickelionienė, Alexey Smirnov, Tautvydas Kojis, Lina Baranauskiene, Elena Manakova, Saulius Gražulis, Asta Zubrienė, Daumantas Matulis, Vytautas Mickevičius, Vilma Petrikaitė

PMC · DOI: 10.3390/ijms26136466 · International Journal of Molecular Sciences · 2025-07-04

## TL;DR

This paper reports the synthesis of new benzenesulfonamide compounds that bind to carbonic anhydrases and show anti-cancer activity in both 2D and 3D cancer cell cultures.

## Contribution

The study introduces novel benzenesulfonamide derivatives with selective binding to carbonic anhydrases and evaluates their efficacy in 3D cancer spheroids.

## Key findings

- Compound 9 and 21 reduced viability of cancer spheroids from multiple cell lines.
- Compound 9 caused structural changes in U-87 and PPC-1 spheroids.
- Compound 21 selectively affected U-87 and MDA-MB-231 spheroids but not PPC-1.

## Abstract

A series of novel derivatives of 3-amino-4-hydroxybenzenesulfonamide was synthesized. As the analyzed compounds possess a sulfonamide group, the affinity of these compounds for human carbonic anhydrases (CAs) was measured by fluorescent thermal shift assay, and compound selectivity for different isoenzymes was identified. The crystal structures of the complexes of compound 25 with CAI and CAII were determined. Additionally, the activity of compounds on the viability of three cancer cell lines—human glioblastoma U-87, triple-negative breast cancer MDA-MB-231, and prostate adenocarcinoma PPC-1—was established using the MTT assay and compared to CAIX-selective and non-selective comparative compounds U-104 and acetazolamide. The half-maximal concentration (EC50) was determined for the identified most active compounds, and their selectivity over fibroblasts was established. Compound 9 (inhibitor of multi-CAs) and compound 21 (not binding to CAs), considered the most promising candidates, were tested in cancer cell 3D cultures (cancer spheroids) by assessing their effect on spheroid growth and viability. Both compounds reduced the viability of spheroids from all cancer cell lines. U-87 and PPC-1 spheroids became looser in the presence of compound 9, while the growth of MDA-MB-231 spheroids was slower compared to the control. Compound 21 reduced the growth of U-87 and MDA-MB-231 3D cultures, with no significant effect on PPC-1 spheroids.

## Linked entities

- **Proteins:** CA1 (carbonic anhydrase 1), CA2 (carbonic anhydrase 2), CA9 (carbonic anhydrase 9)
- **Chemicals:** 3-amino-4-hydroxybenzenesulfonamide (PubChem CID 66814), compound 9 (PubChem CID 447994), compound 21 (PubChem CID 9804984), U-104 (PubChem CID 310360), acetazolamide (PubChem CID 1986)
- **Diseases:** glioblastoma (MONDO:0018177), breast cancer (MONDO:0004989), prostate adenocarcinoma (MONDO:0005082)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** CA1 (carbonic anhydrase 1) [NCBI Gene 759] {aka CA-I, CAB, Car1, HEL-S-11}, CA9 (carbonic anhydrase 9) [NCBI Gene 768] {aka CAIX, MN}, CA2 (carbonic anhydrase 2) [NCBI Gene 760] {aka CA-II, CAC, CAII, Car2, HEL-76, HEL-S-282}
- **Diseases:** glioblastoma (MESH:D005909), breast cancer (MESH:D001943), Cancer (MESH:D009369), prostate adenocarcinoma (MESH:D000230)
- **Chemicals:** 3-Amino-4-hydroxy-benzenesulfonamide (MESH:C030994), acetazolamide (MESH:D000086), sulfonamide (MESH:D013449), U-104 (MESH:C585353), MTT (MESH:C070243)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), U-87 — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_0022), PPC-1 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_4778)

## Full text

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## Figures

14 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12249541/full.md

## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC12249541/full.md

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Source: https://tomesphere.com/paper/PMC12249541