# Enzymatic Reactions Dictated by the 2D Membrane Environment

**Authors:** Ru-Hsuan Bai, Chun-Chen Lin, Chun-Wei Lin

PMC · DOI: 10.1021/acs.jpclett.5c00988 · The Journal of Physical Chemistry Letters · 2025-06-24

## TL;DR

This study explores how the cell membrane affects enzymatic reactions, showing that it can both speed up and limit reaction rates depending on enzyme-membrane interactions.

## Contribution

The study introduces a framework for understanding how membrane affinity can be tuned to optimize enzymatic reactions.

## Key findings

- The membrane environment enhances enzymatic turnover rate but imposes diffusion limitations over time.
- Adjusting enzyme-membrane affinity to an intermediate level allows enzymes to 'hop' on the membrane, sustaining high turnover rates.
- Membrane affinity tuning offers a mechanism for cells to regulate enzymatic processes efficiently.

## Abstract

The cell membrane is a critical component of cellular
architecture,
serving not only as a physical barrier enclosing the cytosol but also
as a dynamic platform for various biochemical reactions. Due to the
unique two-dimensional and fluidic environment of the membrane, reactions
that occur on its surface are subject to specific physical constraints.
While membrane-mediated reactions are known to play key roles in cellular
regulation, their advantages and limitations remain inadequately explored.
In this study, we reconstitute a classic proteolytic cleavage reaction
at the membrane interface, designed for the real-time kinetic analysis
down to the single-molecule level. By systematically altering the
enzyme-membrane affinity, we examined enzyme–substrate interactions
under various conditions. Our findings reveal that while the membrane
environment significantly enhances enzymatic turnover rate, it also
imposes diffusion limitations that immediately reduce this turnover
rate over time. By adjusting the enzyme’s membrane affinity
to an intermediate level, we enable the enzyme to “hop”
on the membrane surface, overcoming these diffusion constraints and
sustaining high enzymatic turnover rate with faster kinetics. These
results highlight the dual role of the membrane environment in regulating
biochemical reactions, balancing enhanced reactivity with physical
limitations. Moreover, the ability to dynamically tune membrane affinity
to optimize reactions underscores the cell’s capacity to regulate
enzymatic processes efficiently. This study provides critical insights
into the role of the cell membrane in biochemical reactions and offers
a broadly applicable framework for understanding membrane-associated
interactions in biological systems.

## Full-text entities

- **Genes:** EGF (epidermal growth factor) [NCBI Gene 403657] {aka CEGF}, EGFR (epidermal growth factor receptor) [NCBI Gene 404306], MBP (myelin basic protein) [NCBI Gene 476160], GRB2 (growth factor receptor bound protein 2) [NCBI Gene 483312], IGF1R (insulin like growth factor 1 receptor) [NCBI Gene 442951]
- **Chemicals:** SDS (MESH:D012967), lipid (MESH:D008055), tyrosine (MESH:D014443), His (MESH:D006639), Alexa Fluor 647 (MESH:C569686), PB (MESH:D007854), Imidazole (MESH:C029899), maleimide (MESH:C043592), phosphotyrosines (MESH:D019000), cysteine (MESH:D003545), cholesterol (MESH:D002784), His4-TEV (-)
- **Species:** Tobacco etch virus (no rank) [taxon 12227]
- **Mutations:** cysteine at position 151, S65T
- **Cell lines:** TEV — Homo sapiens (Human), Transformed cell line (CVCL_0541)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12235624/full.md

## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC12235624/full.md

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Source: https://tomesphere.com/paper/PMC12235624