# Transcriptional profiling clarifies a program of enzalutamide extreme non-response in lethal prostate cancer

**Authors:** Anbarasu Kumaraswamy, Ya-Mei Hu, Joel A. Yates, Chao Zhang, Eva Rodansky, Dhruv Khokhani, Diana Flores, Zhi Duan, Yi Zhang, Shaadi Tabatabaei, Rachel Slottke, Shangyuan Ye, Primo Lara, Adam Foye, Charles J. Ryan, David A. Quigley, Jiaoti Huang, Rahul Aggarwal, Robert E. Reiter, Max S. Wicha, Tomasz M. Beer, Matthew Rettig, Martin Gleave, Christopher P. Evans, Owen N. Witte, Joshua M. Stuart, George V. Thomas, Felix Y. Feng, Eric J. Small, Zheng Xia, Joshi J. Alumkal

PMC · DOI: 10.1038/s41698-025-01002-8 · NPJ Precision Oncology · 2025-07-07

## TL;DR

This study identifies a gene program that predicts which prostate cancer patients will not respond to enzalutamide, suggesting alternative treatments like docetaxel or CDK2 inhibitors.

## Contribution

The study identifies a novel gene program linked to extreme non-response to enzalutamide in prostate cancer.

## Key findings

- The ENR program is associated with proliferation, EMT, and stemness in prostate cancer.
- High ENR program expression correlates with poor AR-targeting outcomes but better docetaxel responses.
- CDK2 suppression reduces ENR program activity and cancer cell viability.

## Abstract

The androgen receptor inhibitor enzalutamide is one of the principal treatments for metastatic prostate cancer. Most patients respond. However, a subset is primary refractory. Seeking to understand enzalutamide extreme non-response (ENR), we analyzed RNA-sequencing in biopsies from men treated prospectively on an enzalutamide clinical trial. We focused on those with ENR (progression within 3 months) vs. long-term response (progression after 24 months). We identified an ENR program linked to proliferation, epithelial-to-mesenchymal transition, and stemness. High expression of this program in additional datasets was independently linked to poor tumor control with AR targeting but favorable tumor control with docetaxel, another standard treatment. CDK2 was implicated in the ENR program. CDK2 suppression reduced the ENR program and viability of ENR program-high prostate cancer models. The ENR gene program is predictive of non-response to AR targeting. Patients whose tumors harbor this program may be good candidates for docetaxel or CDK2 inhibitor clinical trials.

## Linked entities

- **Genes:** CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017]
- **Chemicals:** enzalutamide (PubChem CID 15951529), docetaxel (PubChem CID 148124)
- **Diseases:** prostate cancer (MONDO:0005159)

## Full-text entities

- **Genes:** AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}
- **Diseases:** tumor (MESH:D009369), prostate cancer (MESH:D011471)
- **Chemicals:** docetaxel (MESH:D000077143), enzalutamide (MESH:C540278)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12234718/full.md

## References

9 references — full list in the complete paper: https://tomesphere.com/paper/PMC12234718/full.md

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Source: https://tomesphere.com/paper/PMC12234718