# CHMP6 as a novel prognostic biomarker in bladder cancer: insights from a comprehensive cell death-related gene risk model

**Authors:** Wei Ning, Yan-Ru Yang, Chen-Xu Wu, Yue Hou, Zhi-Wei Liu, Chang-Bin Yang

PMC · DOI: 10.3389/fonc.2025.1564826 · Frontiers in Oncology · 2025-06-24

## TL;DR

CHMP6 is identified as a new biomarker for bladder cancer prognosis, linked to cell survival and migration.

## Contribution

CHMP6 is newly identified as a prognostic biomarker in bladder cancer through a cell death-related gene risk model.

## Key findings

- A risk model using LIPT1, ACSL5, and CHMP6 stratifies bladder cancer patients into distinct risk groups.
- CHMP6 promotes cancer cell survival and migration by regulating the cell cycle.
- The model was validated through survival analysis, immune infiltration, and drug sensitivity predictions.

## Abstract

Bladder cancer (BLCA) is a prevalent and aggressive disease characterized by substantial molecular heterogeneity, complicating its diagnosis and treatment. Existing therapies, including surgery and chemotherapy, often lack specificity. Alterations in cell death mechanisms, such as ferroptosis, cuproptosis, and immunogenic cell death, significantly impact cancer progression and prognosis.

We analyzed gene expression data from TCGA and GEO. Cox regression analyses generated a prognostic risk score model incorporating LIPT1, ACSL5, and CHMP6. This model successfully stratified BLCA patients into different risk categories and was validated through survival analysis, immune infiltration, mutation burden assessment, drug sensitivity predictions, and single-cell analysis. The high-risk group was linked to differentiation processes, developmental stages, and active metabolic pathways.

Experimental validation highlighted CHMP6’s role in enhancing BLCA cell survival and migration by regulating the cell cycle. The model’s prognostic relevance was further supported by drug sensitivity and immune metrics. These results provide valuable insights into potential biomarkers and therapeutic targets for BLCA treatment.

The CHMP6 protein promotes BLCA cell survival and invasive migration through modulation of the cell cycle.

## Linked entities

- **Genes:** CHMP6 (charged multivesicular body protein 6) [NCBI Gene 79643], LIPT1 (lipoyltransferase 1) [NCBI Gene 51601], ACSL5 (acyl-CoA synthetase long chain family member 5) [NCBI Gene 51703]
- **Proteins:** CHMP6 (charged multivesicular body protein 6)
- **Diseases:** bladder cancer (MONDO:0004986)

## Full-text entities

- **Genes:** CHMP6 (charged multivesicular body protein 6) [NCBI Gene 79643] {aka VPS20}, ACSL5 (acyl-CoA synthetase long chain family member 5) [NCBI Gene 51703] {aka ACS2, ACS5, DIAR13, FACL5}, LIPT1 (lipoyltransferase 1) [NCBI Gene 51601] {aka LIPT1D}
- **Diseases:** cancer (MESH:D009369), BLCA (MESH:D001749)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** BLCA — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_S780)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12234533/full.md

## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12234533/full.md

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Source: https://tomesphere.com/paper/PMC12234533