# Structural insights and rational design of Pseudomonasputida KT2440 omega transaminases for enhanced biotransformation of (R)-PAC to (1R, 2S)-Norephedrine

**Authors:** Parijat Das, Santosh Noronha, Prasenjit Bhaumik

PMC · DOI: 10.1016/j.jbc.2025.110289 · The Journal of Biological Chemistry · 2025-05-26

## TL;DR

Researchers improved the efficiency of enzymes from Pseudomonas putida to better convert a chemical into a drug intermediate, using structural insights and mutations.

## Contribution

Novel mutations and structural insights to enhance omega transaminase efficiency for biotransformation.

## Key findings

- A key mutation (L322F) in TA_2799 reduced cofactor dependency by 8-fold and improved activity.
- TA_5182_G119N showed enhanced cofactor affinity.
- Crystal structures revealed flexible loops and hydrogen bonding networks critical for enzyme function.

## Abstract

Omega transaminases (ω-TAs) can mediate the chiral amination of several unnatural substrates without the requirement of an α-COOH group and are highly relevant in the production of several pharmaceutical intermediates of commercial interest. Development of better variants of ω-TAs is hence essential for the biotransformation of unnatural substrates. We studied the active site architecture of the wild-type ω-TAs, to engineer enzymes that enhance the biotransformation of (R)-phenylacetylcarbinol to (1R, 2S)-norephedrine. Two such ω-TAs (TA_5182 and TA_2799) from P. putida KT2440 strain were overexpressed and purified as recombinant proteins. Crystal structures of TA_5182 were solved in two conformations, revealing significant movements of two highly flexible loops in these different states. The TA_2799 structure was determined as a complex with the cofactor pyridoxal 5ʹ-phosphate (PLP) covalently bound to the catalytic K286 as an internal aldimine. Enzyme assays indicated that TA_2799 required a four-fold higher cofactor concentration than TA_5182 to achieve satisfactory biotransformation of (R)-PAC. A key mutation of L322F in TA_2799 drastically reduced (∼8-fold) the cofactor dependency of the TA_2799_L322F mutant enzyme, and the mutant remained active for 96 h at 30 °C. The crystal structure of the mutant enzyme revealed a key asparagine residue that mediates a hydrogen bonding network at the dimeric interface of the enzyme and is absent in TA_5182. The TA_5182_G119N mutant also showed enhanced cofactor affinity. The results of our studies will help generate Pseudomonad ω-TAs and ω-TAs from other organisms with high efficiency for asymmetric synthesis, for further applications in large-scale biotransformation processes.

## Linked entities

- **Chemicals:** (R)-phenylacetylcarbinol (PubChem CID 9920426), (1R, 2S)-norephedrine (PubChem CID 10297), PLP (PubChem CID 1051)
- **Species:** Pseudomonas putida KT2440 (taxon 160488)

## Full-text entities

- **Genes:** w-TAs [NCBI Gene 1041603]
- **Chemicals:** PLP (MESH:D011732), (1R, 2S)-Norephedrine (-)
- **Species:** Pseudomonas putida KT2440 (strain) [taxon 160488]
- **Mutations:** L322F, G119N

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12226076/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12226076/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12226076/full.md

---
Source: https://tomesphere.com/paper/PMC12226076