# Development of novel benzamide class I selective lysine deacetylase inhibitors as potent anticancer agents

**Authors:** Jason H. Gill, Jonathan D. Sellars, Paul G. Waddell, Steven D. Shnyder, Ronald Grigg, Colin W. G. Fishwick

PMC · DOI: 10.1080/14756366.2025.2520612 · Journal of Enzyme Inhibition and Medicinal Chemistry · 2025-07-01

## TL;DR

Researchers developed a new class of anticancer drugs that selectively inhibit specific enzymes involved in cancer growth.

## Contribution

A novel benzamide-based compound with improved selectivity and antitumor activity compared to existing inhibitors.

## Key findings

- A class I selective KDAC inhibitor (compound 7) was identified with preference for HDAC1.
- Compound 7 showed better antitumor activity than Entinostat in an ovarian cancer model.
- The compound's structure allows for improved enzyme binding and therapeutic potential.

## Abstract

Small molecule inhibitors of lysine deacetylases (KDACs), exemplified by histone deacetylases (HDACs), exhibit significant promise as cancer therapeutics. Using a modular combinatorial chemistry approach, a novel class of KDAC inhibitors (KDACi) containing the aminophenyl-benzamide headgroup have been developed, which incorporate a vinyl group within the linker region for active site stabilisation and a trifluoromethyl moiety within the capping group to exploit enzyme surface topology. Consequently, a class I selective KDACi (7) with a preference towards HDAC1 over other class I KDACs was identified. This KDACi orientates differently within the KDAC active site and exhibits an improved antitumour profile relative to the benchmark class I selective KDACi Entinostat (1). The clinical potential of 7 is further exemplified by the inhibition of tumour growth in an in vivo model of ovarian cancer. These results offer significant scope for the rational development of KDACi with improved selectivity against specific KDAC and widespread therapeutic potential.

## Linked entities

- **Proteins:** HDAC1 (histone deacetylase 1)
- **Chemicals:** benzamide (PubChem CID 2331), trifluoromethyl (PubChem CID 137518), Entinostat (PubChem CID 4261)
- **Diseases:** ovarian cancer (MONDO:0005140)

## Full-text entities

- **Genes:** HDAC1 (histone deacetylase 1) [NCBI Gene 3065] {aka GON-10, HD1, KDAC1, RPD3, RPD3L1}
- **Diseases:** cancer (MESH:D009369), ovarian cancer (MESH:D010051)
- **Chemicals:** Entinostat (MESH:C118739), benzamide (MESH:C037689)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12217109/full.md

## References

100 references — full list in the complete paper: https://tomesphere.com/paper/PMC12217109/full.md

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Source: https://tomesphere.com/paper/PMC12217109