# Discovery of Clonixeril as a Sub-Femtomolar Modulator of the Human STING Receptor

**Authors:** Robert P. Sparks, William Lawless, Anna Kharitonova, Rainer Metcalf, Jamie Nunziata, Grace A. Binder, Sauradip Chaudhuri, Christine S.R. Gambino, Michelle Wilde, Linette S. Harding, Jaret J. Crews, Mansi Gopu, Emilia Dalamangas, Sarah Lawless, Mark Eschenfelder, Robert M. Green, Elizabeth X Nompleggi, Timothy H. Tran, Yan Yang, Donna V. Trask, Paul R. Thompson, Rekha Patel, Niketa A. Patel, Wesley H. Brooks, Guy Bradley, Mildred E. Acevedo-Duncan, Alan C. Mullen, James W. Leahy, Kenyon G. Daniel, Wayne C. Guida

PMC · DOI: 10.1021/acscentsci.4c01982 · ACS Central Science · 2025-06-06

## TL;DR

Clonixeril is a powerful new compound that can strongly inhibit the human STING receptor, which is important in the body's immune response.

## Contribution

Clonixeril is the most potent non-nucleotide modulator of human STING discovered to date, with sub-femtomolar efficacy.

## Key findings

- Clonixeril interacts with hSTING in two modes, one with an EC50 above 1 nM and the other in the 1 fM–100 aM range.
- At concentrations below 1 nM, Clonixeril shows inverse dose-dependent antagonistic behavior toward hSTING.
- Clonixeril strongly inhibits hSTING-mediated IFN-1 production in THP-1 and HEK293 cells.

## Abstract

Stimulator of interferon
genes (STING) is a transmembrane endoplasmic
reticulum (ER) resident protein involved in innate immunity. STING
activation occurs by binding of cyclic guanosine-(2′→5′)-monophosphate-adenosine-(3′→5′)-monophosphate
(2′,3′-cGAMP) to STING, which leads to downstream production
of type 1 interferons (IFN-1). We generated molecular dynamics (MD)
equilibrated agonist and antagonist models of human STING (hSTING)
for computer-based screening and now report the discovery of clonixeril
(CXL) as the most potent non-nucleotide hSTING modulator discovered
to date. We demonstrate in vitro and in cellulo that CXL has two modes of interaction with hSTING, one with an EC50 above 1 nM and the other with an EC50 in the
1 fM–100 aM range (10–15–10–16 M). In cell-based experiments, when CXL is titrated below 1 nM,
it displays inverse dose-dependent antagonistic behavior toward hSTING.
We have substantiated that CXL displays this exceptionally strong
inhibitory effect on hSTING mediated IFN-1 production using a THP-1
cell luciferase reporter for interferon regulatory factor 3 (IRF3).
Further characterization of CXL was performed in HEK293 cells by using
biophysical and biochemical techniques.

## Linked entities

- **Genes:** STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], IFN1@ (interferon, type 1, cluster) [NCBI Gene 3438], IRF3 (interferon regulatory factor 3) [NCBI Gene 3661]
- **Proteins:** STING1 (stimulator of interferon response cGAMP interactor 1)
- **Chemicals:** clonixeril (PubChem CID 30823), cyclic guanosine-(2′→5′)-monophosphate-adenosine-(3′→5′)-monophosphate (PubChem CID 135564529), 2′,3′-cGAMP (PubChem CID 135564529)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, IFN1@ (interferon, type 1, cluster) [NCBI Gene 3438] {aka IFNA}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}
- **Chemicals:** 2',3'-cGAMP (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12203428/full.md

## References

42 references — full list in the complete paper: https://tomesphere.com/paper/PMC12203428/full.md

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Source: https://tomesphere.com/paper/PMC12203428