# Bidirectional interdomain crosstalk in a Porphyromonas gingivalis chimeric enzyme coordinates catalytic synergy for aromatic amino acid biosynthesis

**Authors:** Yiyan Yu, Jing An, Yu Bai, Qinghua Xu

PMC · DOI: 10.3389/fmicb.2025.1601098 · Frontiers in Microbiology · 2025-06-13

## TL;DR

This study reveals how a key enzyme in a harmful mouth bacterium works by combining two functions in one protein, offering new ways to fight infections.

## Contribution

The study identifies bidirectional interdomain communication in a bifunctional enzyme from Porphyromonas gingivalis, revealing a mechanism for coordinated catalytic synergy.

## Key findings

- Two interdomain interfaces (DAH7PS dimerization and D-CM polar interactions) mediate functional coordination in PgiDAH7PS-CM.
- Mutagenesis and high Na+ exposure disrupt enzyme activity, confirming polar networks are critical for domain crosstalk.
- Phylogenetic analysis suggests domain fusion is specific to periodontal pathogens, indicating adaptive evolution.

## Abstract

The shikimate pathway, critical for bacterial aromatic amino acid biosynthesis, represents a prime therapeutic target due to its absence in humans. This study elucidates the structural and functional interplay within the bifunctional enzyme DAH7PS-CM from Porphyromonas gingivalis (PgiDAH7PS-CM), a keystone periodontal pathogen. Integrating AlphaFold3-predicted models with biochemical validation, we identified two interdomain interfaces: a conserved DAH7PS dimerization interface and a polar interaction-driven D-CM interface (e.g., E287/R291). Mutagenesis of these residues and exposure to high Na+ concentrations disrupted enzyme function, confirming polar networks mediate domain crosstalk. The DAH7PS domain’s dimerization relies on conserved interfaces homologous to monofunctional DAH7PS enzymes, while the CM dimer substitutes structural roles through distinct interfacial features. Phylogenetic analysis indicates DAH7PS-CM’s specificity to periodontal pathogens, suggesting adaptive selection for domain fusion to synchronize catalytic steps. Our findings highlight the D-CM interface as a nexus for quaternary stability and allosteric communication, enabling coordinated pathway flux. These insights provide a structural basis for targeting interfacial networks with salt-modulating inhibitors or engineered disruptors, offering novel strategies to impede bacterial virulence and biofilm-associated infections.

## Linked entities

- **Chemicals:** Na+ (PubChem CID 923), shikimate (PubChem CID 8742)
- **Species:** Porphyromonas gingivalis (taxon 837)

## Full-text entities

- **Diseases:** infections (MESH:D007239)
- **Chemicals:** shikimate (MESH:C000723335), aromatic amino acid (MESH:D024322), Na+ (MESH:D012964), DAH7PS-CM (-), salt (MESH:D012492)
- **Species:** Porphyromonas gingivalis (species) [taxon 837], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12202928/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12202928/full.md

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Source: https://tomesphere.com/paper/PMC12202928