# Molecular alterations in IDH-mutant astrocytoma: A multi-institutional retrospective study

**Authors:** Keng Lam, Hanim I Ozkizilkaya, Denái R Milton, Antonio Dono, Yajie Liu, Suprateek Kundu, Vinodh A Kumar, Jason M Johnson, Yoshua Esquenazi, Chirag B Patel, Leomar Y Ballester

PMC · DOI: 10.1093/noajnl/vdaf088 · 2025-04-28

## TL;DR

This study analyzed molecular changes in IDH-mutant astrocytoma to understand their impact on patient survival and prognosis.

## Contribution

The study provides contemporary survival data and identifies key molecular factors affecting outcomes in IDH-mutant astrocytoma patients.

## Key findings

- Age over 40 and higher CNS WHO grade were linked to worse survival in IDH-mutant astrocytoma patients.
- BRCA2 mutations and lower CNS WHO grade were associated with better survival outcomes.
- Higher tumor mutation burden was linked to worse overall survival.

## Abstract

Several molecular alterations have been identified to provide prognosis for patients with isocitrate dehydrogenase (IDH)-mutant astrocytoma. However, contemporary baseline survival data with respect to their molecular alterations are lacking. The prognostic value of histologic grading remains controversial.

This was a retrospective multi-site study of adult IDH-mutant diffuse astrocytoma patients. Overall survival (OS) was estimated using the Kaplan-Meier method. Associations between OS and measures of interest were evaluated using Cox proportional hazards regression models.

We identified 241 eligible patients. The most frequent mutations were IDH1 (98%), TP53 (91%), ATRX (70%), ARID1A (8%), BRCA2 (6%), TSC2 (6%), CDKN2A (6%), and CREBBP (6%). IDH2 mutations were identified in 2%. By univariate analysis, age > 40 (hazard ratio [HR], 2.03; 95% CI, 1.20-3.45; p = .009) was associated with worse OS. Wildtype BRCA2 compared with mutated BRCA2 (HR, 0.42; 95% CI, 0.20-0.90; p = .024) and Central Nervous System World Health Organization (CNS WHO) grade 2 astrocytoma compared with grade 3 disease (HR, 0.40; 95% CI, 0.21-0.78; p = .007) were associated with better OS. In multivariable analysis, age > 40 (HR, 2.06; 95% CI, 1.18-3.59; p = .011) was associated with worse OS and CNS WHO grade 2 (HR, 0.42; 95% CI, 0.21-0.83; p = .012) remained associated with improved OS. We identified an association between increased tumor mutation burden (TMB) and worse OS.

Age and CNS WHO grade remain essentials for risk stratification among IDH-mutant astrocytoma patients. Further studies are warranted to determine the prognostic implications of BRCA2 mutations and TMB.

## Linked entities

- **Genes:** IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417], TP53 (tumor protein p53) [NCBI Gene 7157], ATRX (ATRX chromatin remodeler) [NCBI Gene 546], ARID1A (AT-rich interaction domain 1A) [NCBI Gene 8289], BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675], TSC2 (TSC complex subunit 2) [NCBI Gene 7249], CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029], CREBBP (CREB binding lysine acetyltransferase) [NCBI Gene 1387], IDH2 (isocitrate dehydrogenase (NADP(+)) 2) [NCBI Gene 3418]
- **Diseases:** astrocytoma (MONDO:0019781)

## Full-text entities

- **Genes:** BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, ATRX (ATRX chromatin remodeler) [NCBI Gene 546] {aka JMS, MRX52, RAD54, RAD54L, XH2, XNP}, ARID1A (AT-rich interaction domain 1A) [NCBI Gene 8289] {aka B120, BAF250, BAF250a, BM029, C1orf4, CSS2}, CREBBP (CREB binding lysine acetyltransferase) [NCBI Gene 1387] {aka CBP, KAT3A, MKHK1, RSTS, RSTS1}, TSC2 (TSC complex subunit 2) [NCBI Gene 7249] {aka LAM, PPP1R160, TSC4}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, IDH2 (isocitrate dehydrogenase (NADP(+)) 2) [NCBI Gene 3418] {aka D2HGA2, ICD-M, IDH, IDH-2, IDHM, IDP}
- **Diseases:** tumor (MESH:D009369), Central Nervous System (MESH:D002493), astrocytoma (MESH:D001254)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12199353/full.md

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Source: https://tomesphere.com/paper/PMC12199353