# Extramedullary Relapse of CBFA2T3::GLIS2-Positive Megakaryoblastic Leukemia Mimicking Secondary Ewing Sarcoma: An Exemplary Case for the Diagnostic Trap

**Authors:** Svetlana Lebedeva, Ekaterina Mikhailova, Sophia Bogacheva, Dmitry Abramov, Svetlana Kashpor, Alexander Druy, Alexandra Semchenkova, Marina Gaskova, Olga Lotonina, Ilya Sidorov, Galina Tereschenko, Yulia Olshanskaya, Galina Novichkova, Alexey Maschan, Elena Zerkalenkova, Alexander Popov

PMC · DOI: 10.3390/ijms26125895 · International Journal of Molecular Sciences · 2025-06-19

## TL;DR

A child's relapse of a rare leukemia was mistakenly diagnosed as a different cancer due to similar features, highlighting diagnostic challenges.

## Contribution

Highlights diagnostic challenges in distinguishing extramedullary AMKL relapse from secondary Ewing sarcoma.

## Key findings

- Extramedullary CBFA2T3::GLIS2-positive AMKL relapse was misdiagnosed as secondary Ewing sarcoma.
- Morphological and immunophenotypic features of AMKL and Ewing sarcoma overlap, complicating diagnosis.
- Molecular studies confirmed the presence of CBFA2T3::GLIS2 fusion, ruling out Ewing sarcoma.

## Abstract

In children without Down syndrome who have acute megakaryoblastic leukemia (AMKL), inv(16)(p13q24)/CBFA2T3::GLIS2 is the most frequent genetic aberration. Pediatric CBFA2T3::GLIS2-positive AMKL is strongly associated with a poor prognosis and a high cumulative incidence of relapse. One of the key laboratory signs of CBFA2T3::GLIS2-positive AMKL is the RAM immunophenotype, which looks very similar to that of solid-tumor bone marrow (BM) infiltration. For this reason, in cases of isolated extramedullary involvement of CBFA2T3::GLIS2-positive AMKL, excluding solid tumors may be challenging. We report a case of a girl with isolated extramedullary CBFA2T3::GLIS2-positive AMKL relapse, which was misdiagnosed as secondary Ewing sarcoma. The morphological differential diagnosis between Ewing sarcoma and AMKL presented significant challenges owing to their overlapping histological features (small, round blue-cell morphology and similar growth patterns). The tumor cells’ immunophenotype completely mirrored that at the initial diagnosis of AMKL. Additional cytogenetic and molecular studies confirmed the presence of the CBFA2T3::GLIS2 fusion, but no Ewing sarcoma-specific EWSR1, FUS and CIC fusion transcripts were found. Thus, extramedullary CBFA2T3::GLIS2-positive AMKL relapse was confirmed. The presented case demonstrates the difficulties in differential diagnosis between AMKL relapse and the development of a secondary tumor.

## Linked entities

- **Genes:** CBFA2T3 (CBFA2/RUNX1 partner transcriptional co-repressor 3) [NCBI Gene 863], GLIS2 (GLIS family zinc finger 2) [NCBI Gene 84662], EWSR1 (EWS RNA binding protein 1) [NCBI Gene 2130], FUS (FUS RNA binding protein) [NCBI Gene 2521], CIC (capicua transcriptional repressor) [NCBI Gene 23152]
- **Diseases:** acute megakaryoblastic leukemia (MONDO:0018872), Ewing sarcoma (MONDO:0012817)

## Full-text entities

- **Genes:** FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, EWSR1 (EWS RNA binding protein 1) [NCBI Gene 2130] {aka EWS, EWS-FLI1}
- **Diseases:** Down syndrome (MESH:D004314), solid tumors (MESH:D009369), solid (MESH:D018250), AMKL (MESH:D007947), Ewing Sarcoma (MESH:D012512)

## Full text

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## Figures

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## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12192580/full.md

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Source: https://tomesphere.com/paper/PMC12192580