# Transcriptomic profiling reveals response mechanisms of Lactuca indica seedlings to seawater irrigation stress

## TL;DR

This study explores how wild lettuce seedlings respond to seawater stress, identifying key genes and pathways that improve salt tolerance in different plant tissues.

## Contribution

The study provides a tissue-specific transcriptome profile of wild Lactuca indica under seawater stress, identifying novel candidate genes for salt tolerance.

## Key findings

- Y individuals showed better seawater tolerance than S individuals in physiological and morphological traits.
- Leaves enriched LHC genes, stems upregulated wax biosynthesis genes, and roots activated nitrogen metabolism genes under stress.
- Candidate genes like CER1, CYP86A4S, and NRT2 were identified as key for salt tolerance in specific tissues.

## Abstract

The increasing global soil salinization has accelerated research on seawater irrigation agriculture. Developing wild vegetables through seawater irrigation could establish foundational strategies for utilizing island vegetable germplasm resources.

This study investigated two distinct leaf-shaped individuals (S and Y) of wild Lactuca indica (L. indica) through hydroponic experiments with diluted seawater during seedling stage. Physiological and morphological assessments revealed that Y exhibited superior seawater tolerance compared to S. Tissue-specific -plant transcriptome analysis identified key metabolic pathways and regulatory genes in roots, stems, and leaves.

Differential gene expression analysis showed tissue-specific enrichment patterns: leaves predominantly enriched light-harvesting complex (LHC) genes in photosynthesis pathways; stems exhibited upregulation in cutin, suberin, and wax biosynthesis pathways; while roots showed activation of nitrogen metabolism pathways.

Based on the data from transcriptomics, we infered that the key salt-tolerant candidate genes include: (1) leaf-specific LHC genes enhancing photosynthetic efficiency; (2) stem-expressed wax biosynthesis gene aldehyde decarbonylase CER1, and cytochrome P450 family members fatty acid omega-hydroxylase CYP86A4S and cytochrome P450 family 77 subfamily A (CYP77A); and (3) root-specific nitrogen metabolism regulators (nitrate reductase (NR), nitrate/nitrite transporter 2 (NRT2), and nitrite reductase (NirA). This study provides the comprehensive tissue-specific transcriptome profile of wild L. indica under seawater irrigation, predicting crucial metabolic pathways and candidate genes that might enhance seawater tolerance. Our findings establish a valuable reference for salt tolerance research in wild vegetables and offer potential genetic targets for improving crop resilience in saline-affected ecosystems.