# Pseudogenes as Potential Diagnostic, Prognostic and Therapeutic Biomarkers in Colorectal Cancer: A Systematic Review

**Authors:** Ali Asadzadeh, Alireza Zangooie, Parmida Bagheri, Helia Zangooie, Zahra Salehi

PMC · DOI: 10.1002/cnr2.70263 · Cancer Reports · 2025-06-24

## TL;DR

This review explores how pseudogenes, once thought non-functional, may serve as biomarkers and therapeutic targets in colorectal cancer.

## Contribution

The study systematically evaluates pseudogenes' emerging roles in colorectal cancer diagnostics, prognosis, and treatment.

## Key findings

- Pseudogenes like DUXAP8 and SUCLG2P2 are linked to CRC processes such as proliferation and invasion.
- MYLKP1 and POU5F1P1 pseudogenes show potential as diagnostic and prognostic biomarkers.
- Pseudogenes like CTNNAP1 and NMRAL2P suggest therapeutic potential for CRC treatment.

## Abstract

Colorectal cancer (CRC) is a leading cause of oncologic death worldwide. Elucidating the molecular mechanisms that underpin its pathogenesis is essential for identifying novel therapeutic targets. Pseudogenes have historically been regarded as non‐functional genomic vestiges but have gained recognition for their contributory roles in the oncogenesis of CRC.

This systematic review aims to comprehensively evaluate the current literature regarding the involvement of pseudogenes in CRC, with a focus on their clinical relevance as diagnostic and prognostic biomarkers and their potential as innovative therapeutic targets.

We conducted a comprehensive literature search following the PRISMA guidelines across PubMed, SCOPUS, and Web of Science databases. Two reviewers independently carried out the screening of studies and extraction of relevant data. Nineteen studies met the inclusion criteria. These studies highlight pseudogenes' emerging role in colorectal cancer, transitioning from being seen as evolutionary remnants to recognized contributors in tumorigenesis. Key pseudogenes like DUXAP8, SUCLG2P2, and SUMO1P3 are linked to crucial CRC processes such as proliferation, migration, invasion, and angiogenesis. The diagnostic and prognostic potential is found in pseudogenes like MYLKP1 (with SNPs rs12490683 and rs12497343) and POU5F1P1 (SNP rs6983267). Additionally, CDCP1, SUCLG2P2, and MT1DP offer prognostic insights, guiding personalized treatment approaches. Pseudogenes such as CTNNAP1, NMRAL2P, and DUXAP8 show therapeutic potential, advocating for further research into their mechanisms to enhance CRC diagnostics and personalized care. The intricate involvement of pseudogenes in CRC pathogenesis underscores their importance.

Our review illuminates the promise of pseudogenes as biomarkers and therapeutic targets, indicating a significant step toward the integration of pseudogenes in the future paradigm of precision medicine for CRC.

## Linked entities

- **Genes:** DUXAP8 (double homeobox A pseudogene 8) [NCBI Gene 503637], SUCLG2P2 (SUCLG2 pseudogene 2) [NCBI Gene 283398], SUMO1P3 (SUMO1 pseudogene 3) [NCBI Gene 474338], MYLKP1 (myosin light chain kinase pseudogene 1) [NCBI Gene 9430], POU5F1B (POU class 5 homeobox 1B) [NCBI Gene 5462], CDCP1 (CUB domain containing protein 1) [NCBI Gene 64866], MT1DP (metallothionein 1D, pseudogene) [NCBI Gene 326343], CTNNA1P1 (catenin alpha 1 pseudogene 1) [NCBI Gene 1498], NMRAL2P (NmrA like redox sensor 2, pseudogene) [NCBI Gene 344887]
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** POU5F1B (POU class 5 homeobox 1B) [NCBI Gene 5462] {aka OCT4-PG1, OCT4PG1, OTF3C, OTF3P1, POU5F1P1, POU5F1P4}, DUXAP8 (double homeobox A pseudogene 8) [NCBI Gene 503637], MYLKP1 (myosin light chain kinase pseudogene 1) [NCBI Gene 9430] {aka MYLKP}, SUMO1P3 (SUMO1 pseudogene 3) [NCBI Gene 474338], CTNNA1P1 (catenin alpha 1 pseudogene 1) [NCBI Gene 1498] {aka CTNNAP1}, MT1DP (metallothionein 1D, pseudogene) [NCBI Gene 326343] {aka MTM}, NMRAL2P (NmrA like redox sensor 2, pseudogene) [NCBI Gene 344887] {aka NMRAL1P1}, CDCP1 (CUB domain containing protein 1) [NCBI Gene 64866] {aka CD318, SIMA135, TRASK}, SUCLG2P2 (SUCLG2 pseudogene 2) [NCBI Gene 283398]
- **Diseases:** CRC (MESH:D015179), oncologic death (MESH:D003643)
- **Mutations:** rs6983267, rs12497343, rs12490683

## Full text

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## Figures

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## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC12187983/full.md

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Source: https://tomesphere.com/paper/PMC12187983