# Synergistic application of artificial intelligence and response surface methodology for predicting and enhancing in vitro tuber production of potato (Solanum tuberosum)

**Authors:** Rajermani Thinakaran, Ecenur Korkmaz, Başak Ünver, Seyid Amjad Ali, Zeshan Iqbal, Muhammad Aasim, Moumita Gangopadhyay, Moumita Gangopadhyay, Moumita Gangopadhyay

PMC · DOI: 10.1371/journal.pone.0325754 · PLOS One · 2025-06-24

## TL;DR

This study combines AI and response surface methodology to optimize in vitro potato tuber production, finding that sucrose and BAP are key factors.

## Contribution

The novel integration of AI and RSM for optimizing in vitro tuber production in potato, highlighting sucrose and BAP as critical variables.

## Key findings

- Fontana cultivar achieved 75.6% tuberization with 90g/L sucrose, 2mg/L BAP, and 1mg/L IBA.
- Sucrose was the most significant factor for growth parameters, especially tuber size and weight.
- Random Forest AI model showed highest predictive accuracy (R2=0.379) but still had high error rates.

## Abstract

In vitro regeneration of potato tubers is highly significant in modern agriculture as it offers efficient propagation, genetic enhancement, and pathogen-free seed production. This study aimed to optimize in vitro tuberization by manipulating key variables, including cultivar, sucrose concentration, and cytokinin-auxin interactions. Results were analyzed by response surface regression analysis (RSRA) of Response Surface Methodology (RSM), followed by data validation and prediction with machine learning (ML) models. Fontana cultivar exhibited superior tuberization performance, with a maximum tuberization rate of 75.6% from Murashige and Skoog (MS) medium supplemented with 90 g/L sucrose, 2 mg/L BAP, and 1 mg/L Indole-3-butyric acid (IBA). Sucrose concentration was the most significant factor for all growth parameters, particularly tuber size and weight. RSRA analysis confirmed the significance of the linear effects of sucrose and BAP on tuberization, while auxins primarily regulated tuber size and weight. Pareto chart analysis highlighted sucrose as the most influential variable for both cultivars. Heatmap and network plot analyses further illustrated strong positive correlations between sucrose, BAP, and tuber formation, whereas auxins exhibited comparatively weaker effects. Results analyzed by Machine learning (ML) models revealed maximum predictive accuracy for tuberization by Random Forest (RF) model with an R2 of 0.379. However, all other models also faced challenges with high error rates, indicating the need for improved feature engineering. This study concludes that optimizing sucrose concentration and BAP levels, combined with selective auxin application, and integration of RSM and AI presents a promising strategy for optimization and potentially improving large-scale commercial production of disease-free potato tubers.

## Linked entities

- **Chemicals:** BAP (PubChem CID 2336), Indole-3-butyric acid (PubChem CID 8617), sucrose (PubChem CID 5988)
- **Species:** Solanum tuberosum (taxon 4113)

## Full-text entities

- **Chemicals:** cytokinin (MESH:D003583), Sucrose (MESH:D013395), auxin (MESH:D007210), BAP (-)
- **Species:** Solanum tuberosum (potatoes, species) [taxon 4113]

## Full text

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## Figures

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## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12186905/full.md

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Source: https://tomesphere.com/paper/PMC12186905