# TANDEM ZINC‐FINGER/PLUS3 integrates light signaling and flowering regulatory pathways at the chromatin level

**Authors:** Giorgio Perrella, Elisa Vellutini, Allan Beveridge, Graham Hamilton, Pawel Herzyk, Eirini Kaiserli

PMC · DOI: 10.1111/nph.70213 · The New Phytologist · 2025-05-12

## TL;DR

This study reveals how light signals influence flowering in plants by altering chromatin structure through a protein called TANDEM ZINC-FINGER/PLUS3.

## Contribution

The study identifies TANDEM ZINC-FINGER/PLUS3 as a novel integrator of light signaling and flowering pathways via chromatin regulation.

## Key findings

- TANDEM ZINC-FINGER/PLUS3 binds to chromatin-modifying genes like FLOWERING LOCUS D and histone deacetylase 6.
- It represses FLOWERING LOCUS C transcription, accelerating flowering in Arabidopsis thaliana.
- TZP mediates crosstalk between light signals and flowering pathways at the chromatin level.

## Abstract

Environmental and endogenous stimuli determine plant developmental transitions including flowering through multiple signaling cascades. Although the key activators and repressors of flowering initiation are defined, the components and mechanisms integrating light signaling and flowering pathways are not fully established. This study investigates the role of TANDEM ZINC‐FINGER/PLUS3 (TZP), a light‐integrating transcriptional regulator, to elucidate how light cues influence the epigenetic regulation of flowering in Arabidopsis thaliana.To dissect the molecular function of TZP, this study employed a combination of genetics, RNA sequencing, chromatin immunoprecipitation sequencing and phenotypic assays. These approaches were used to determine TZP's genomic binding sites, its downstream gene targets and its influence on flowering time and chromatin modifications. TANDEM ZINC‐FINGER/PLUS3 was found to directly associate with the promoter regions of chromatin‐modifying genes, including FLOWERING LOCUS D (a histone H3K4 demethylase) and histone deacetylase 6 (a histone deacetylase). This regulation promotes a chromatin environment that represses FLOWERING LOCUS C (FLC) transcription, thereby accelerating flowering. TANDEM ZINC‐FINGER/PLUS3 thus functions upstream of multiple pathways integrating photoperiodic and autonomous floral cues.TANDEM ZINC‐FINGER/PLUS3 mediates crosstalk between light signaling and flowering pathways by modulating chromatin structure at the FLC locus. This provides a mechanistic framework for understanding how environmental signals dynamically influence epigenetic regulation of developmental transitions.

Environmental and endogenous stimuli determine plant developmental transitions including flowering through multiple signaling cascades. Although the key activators and repressors of flowering initiation are defined, the components and mechanisms integrating light signaling and flowering pathways are not fully established. This study investigates the role of TANDEM ZINC‐FINGER/PLUS3 (TZP), a light‐integrating transcriptional regulator, to elucidate how light cues influence the epigenetic regulation of flowering in Arabidopsis thaliana.

To dissect the molecular function of TZP, this study employed a combination of genetics, RNA sequencing, chromatin immunoprecipitation sequencing and phenotypic assays. These approaches were used to determine TZP's genomic binding sites, its downstream gene targets and its influence on flowering time and chromatin modifications. TANDEM ZINC‐FINGER/PLUS3 was found to directly associate with the promoter regions of chromatin‐modifying genes, including FLOWERING LOCUS D (a histone H3K4 demethylase) and histone deacetylase 6 (a histone deacetylase). This regulation promotes a chromatin environment that represses FLOWERING LOCUS C (FLC) transcription, thereby accelerating flowering. TANDEM ZINC‐FINGER/PLUS3 thus functions upstream of multiple pathways integrating photoperiodic and autonomous floral cues.

TANDEM ZINC‐FINGER/PLUS3 mediates crosstalk between light signaling and flowering pathways by modulating chromatin structure at the FLC locus. This provides a mechanistic framework for understanding how environmental signals dynamically influence epigenetic regulation of developmental transitions.

## Linked entities

- **Genes:** FLD (protein FLOWERING locus D-like protein) [NCBI Gene 820202], FLC (K-box region and MADS-box transcription factor family protein) [NCBI Gene 830878], HDA6 (histone deacetylase 6) [NCBI Gene 836431]
- **Species:** Arabidopsis thaliana (taxon 3702)

## Full-text entities

- **Genes:** AT4G09784 (histone deacetylase) [NCBI Gene 6240301], FLD (protein FLOWERING locus D-like protein) [NCBI Gene 820202] {aka FLOWERING LOCUS D, RSI1, Reduced Systemic immunity 1}, FLC (K-box region and MADS-box transcription factor family protein) [NCBI Gene 830878] {aka AGAMOUS-like 25, AGL25, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F, MADS BOX PROTEIN FLOWERING LOCUS F}, HDA6 (histone deacetylase 6) [NCBI Gene 836431] {aka ATHDA6, AXE1, HISTONE DEACETYLASE 6, MDC12.7, MDC12_7, RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1}, TZP (zinc knuckle (CCHC-type) family protein) [NCBI Gene 834383] {aka K9D7.13, K9D7_13}
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12177312/full.md

## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC12177312/full.md

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Source: https://tomesphere.com/paper/PMC12177312