# A Japanese Case of Lenz‐Majewski Syndrome With a Novel PTDSS1 Variant

**Authors:** Yasuko Kobari, Non Miyata, Jun Takayama, Naoya Saijo, Tomohisa Suzuki, Shigeo Kure, Atsuo Kikuchi, Gen Tamiya, Takumi Takizawa

PMC · DOI: 10.1002/mgg3.70112 · Molecular Genetics & Genomic Medicine · 2025-06-17

## TL;DR

A 5-year-old Japanese girl with a new PTDSS1 gene variant shows symptoms of Lenz-Majewski syndrome, suggesting a wider range of possible symptoms than previously known.

## Contribution

A novel PTDSS1 variant (p.Arg95Gln) is identified and functionally characterized in a patient with Lenz-Majewski syndrome.

## Key findings

- The patient had a de novo PTDSS1 c.284G>A (p.Arg95Gln) variant associated with Lenz-Majewski syndrome.
- Functional analysis showed increased PS synthase activity, supporting the variant's pathogenicity.
- The case suggests Lenz-Majewski syndrome may have a broader phenotypic spectrum than previously recognized.

## Abstract

Lenz‐Majewski syndrome (LMS) is a rare genetic disorder characterized by osteosclerosis, intellectual disability, characteristic facies, and distinct craniofacial, dental, cutaneous, and distal‐limb anomalies. Mutations in the PTDSS1 gene, which encodes one of the phosphatidylserines (PS) synthase enzymes, PSS1, have been identified as causative in LMS patients. These mutations make PSS1 insensitive to feedback inhibition by PS levels.

Whole genome sequence (WGS) was performed on a patient with congenital cutis laxa and her parents. PS synthase activity was analyzed in PTDSS1 mutant cDNA clones to evaluate functional alterations.

A 5‐year‐old girl presented with congenital skin wrinkles and was initially diagnosed with congenital cutis laxa. She had bilateral inner ear hypoplasia, bilateral low‐frequency hearing loss, attention‐deficit/hyperactivity disorder, and mild intellectual disability. Physical examination revealed protruding ears, frontal bossing, and dental malalignment. A de novo heterozygous missense variant in the PTDSS1 gene, c.284G>A (p. Arg95Gln) was identified by WGS. Functional analysis indicated increased PS synthase activity, supporting the pathogenicity of this variant.

The patient's cutis laxa and facial features were consistent with LMS, though radiographic findings did not reveal the characteristic sclerosing bone dysplasia reported in previous cases. This observation suggests that LMS may have a broader phenotypic spectrum than previously recognized.

A Japanese girl with a de novo PTDSS1 R95Q variant showed mild sclerosing bone dysplasia. Functional and structural analyses revealed intermediate PS synthesis activity compared to previously reported variants, suggesting a broader phenotypic spectrum of LMS.

## Linked entities

- **Genes:** PTDSS1 (phosphatidylserine synthase 1) [NCBI Gene 9791]
- **Proteins:** CDSN (corneodesmosin)
- **Diseases:** attention-deficit/hyperactivity disorder (MONDO:0007743), intellectual disability (MONDO:0001071)

## Full-text entities

- **Genes:** PTDSS1 (phosphatidylserine synthase 1) [NCBI Gene 9791] {aka LMHD, PSS1, PSSA}
- **Diseases:** bone dysplasia (MESH:D001848), frontal bossing (MESH:D020233), osteosclerosis (MESH:D010026), genetic disorder (MESH:D030342), intellectual disability (MESH:D008607), LMS (MESH:D012779), craniofacial, dental, cutaneous, and distal-limb anomalies (MESH:D019465), dental malalignment (MESH:D017760), attention-deficit/hyperactivity disorder (MESH:D001289), cutis laxa (MESH:D003483), protruding ears (MESH:D004427), low-frequency hearing loss (MESH:C565121), inner ear hypoplasia (MESH:D007759)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p. Arg95Gln

## Full text

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## Figures

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## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12171241/full.md

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Source: https://tomesphere.com/paper/PMC12171241