# Metagenomic analysis of heavy water-adapted bacterial communities

**Authors:** Juan Rivas-Santisteban, José M. Martínez, Cristina Escudero, Rebecca Hernández-Antolín, Laura Cid-Barrio, Gary J. Ellis, Esteban Domingo, Carlos Sánchez, Francisco Sobrino, Ricardo Amils

PMC · DOI: 10.1099/mgen.0.001414 · Microbial Genomics · 2025-05-29

## TL;DR

This paper explores bacteria that survived in pure heavy water for over 30 years, revealing unique genetic adaptations.

## Contribution

The study identifies novel genetic features in bacteria adapted to extreme heavy water environments.

## Key findings

- Pseudomonadota and Bacteroidota were the most abundant bacteria in heavy water.
- Adapted bacteria had shorter genes and fewer polar amino acids compared to light water species.
- Genes related to DNA repair and transposition, especially IS3 mutants, were highly prevalent.

## Abstract

Micro-organisms can survive and thrive in unusual and extreme environments. Here, we present a metagenomic analysis of living bacteria found in highly pure, deleterious heavy water (>99% D2O), stored in sealed plastic containers for more than 30 years, without any external supply. Deep DNA sequencing analyses have revealed that the most abundant genetic signatures were primarily associated with Pseudomonadota and Bacteroidota. These bacteria exhibited shorter gene lengths and depletion of polar and metabolically costly amino acids compared to the related species from light water environments. Genes related to DNA transposition, repair and modification were notably abundant, particularly mutant forms of the IS3 transposable elements family. We also explore potential carbon and energy sources and discuss the evolutionary implications of bacteria capable of surviving in such an extreme human-made environment.

## Linked entities

- **Genes:** CHD7 (chromodomain helicase DNA binding protein 7) [NCBI Gene 55636]
- **Chemicals:** D2O (PubChem CID 24602)
- **Species:** Pseudomonadota (taxon 1224), Bacteroidota (taxon 976)

## Full-text entities

- **Genes:** CHD7 (chromodomain helicase DNA binding protein 7) [NCBI Gene 55636] {aka CRG, HH5, IS3, KAL5}
- **Chemicals:** carbon (MESH:D002244), amino acids (MESH:D000596)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12171019/full.md

## References

76 references — full list in the complete paper: https://tomesphere.com/paper/PMC12171019/full.md

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Source: https://tomesphere.com/paper/PMC12171019