# Fast photostable expansion microscopy using QDots and deconvolution

**Authors:** Loku Gunawardhana, Wilna Moree, Jiaming Guo, Camille Artur, Tasha Womack, Jason L. Eriksen, David Mayerich, Luca Pesce, Luca Pesce, Luca Pesce, Luca Pesce

PMC · DOI: 10.1371/journal.pone.0325155 · PLOS One · 2025-06-13

## TL;DR

This paper introduces a faster and more stable method for expansion microscopy using quantum dots and widefield imaging to improve image quality and speed.

## Contribution

A novel QDot labeling protocol and widefield imaging approach for faster, photostable expansion microscopy.

## Key findings

- QDots improve photostability and signal-to-noise ratio in expansion microscopy.
- Widefield imaging with deconvolution reduces 3D image acquisition time compared to laser scanning.
- The method is scalable for large three-dimensional samples.

## Abstract

Expansion microscopy (ExM) enables sub-diffraction imaging by physically expanding labeled tissue samples. This increases the tissue volume relative to the instrument point spread function (PSF), thereby improving the effective resolution by reported factors of 4 - 20X. However, this volume increase dilutes the fluorescence signal, reducing both signal-to-noise ratio (SNR) and acquisition speed. This paper proposes and validates a method for mitigating these challenges. We overcame the limitations of ExM by developing a fast photo-stable protocol to enable scalable widefield three-dimensional imaging with ExM. We combined widefield imaging with quantum dots (QDots). Widefield imaging provides a significantly faster acquisition of a single field-of-view (FOV). However, the uncontrolled incoherent illumination induces photobleaching. We mitigated this challenge using QDots, which exhibit a long fluorescence lifetime and improved photostability. First, we developed a protocol for QDot labeling. Next, we utilized widefield imaging to obtain 3D image stacks and applied deconvolution, which is feasible due to reduced scattering in ExM samples. We show that increased transparency, which is a side-effect of ExM, enables widefield deconvolution, dramatically reducing the acquisition time for three-dimensional images compared to laser scanning microscopy. The proposed QDot labeling protocol is compatible with ExM and provides enhanced photostability compared to traditional fluorescent dyes. Widefield imaging significantly improves SNR and acquisition speed compared to conventional confocal microscopy. Combining widefield imaging with QDot labeling and deconvolution has the potential to be applied to ExM for faster imaging of large three-dimensional samples with improved SNR.

## Full-text entities

- **Genes:** Gfap (glial fibrillary acidic protein) [NCBI Gene 14580], Mbp (myelin basic protein) [NCBI Gene 17196] {aka Hmbpr, golli-mbp, jve, mld, shi}
- **Diseases:** ExM (OMIM:616452), brain injury (MESH:D001930)
- **Chemicals:** TEMED (MESH:C005798), ethanol (MESH:D000431), guanidine HCl (MESH:D019791), Xylene (MESH:D014992), Hoechst 34580 (MESH:C572112), EDTA (MESH:D004492), sodium chloride (MESH:D012965), sodium acrylate (MESH:C036658), Tween 20 (MESH:D011136), 6-((acryloyl)amino)hexanoic acid (-), 4-hydroxy-TEMPO (MESH:C505333), biotin (MESH:D001710), lipids (MESH:D008055), Alexa 594 (MESH:C417664), ammonium persulfate (MESH:C031276), APS (MESH:D000250), PBS (MESH:D007854), acrylamide (MESH:D020106), water (MESH:D014867), DMSO (MESH:D004121), OCT (MESH:C051883), Triton X-100 (MESH:D017830)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** N40X

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12165338/full.md

## References

33 references — full list in the complete paper: https://tomesphere.com/paper/PMC12165338/full.md

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Source: https://tomesphere.com/paper/PMC12165338