# Transcriptome sequencing data sets of Escherichia coli K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin

**Authors:** Alexander Balkin, Andrey Plotnikov, Tatiana Konnova, Elena Shagimardanova, Hamza Hamo, Yuri Gogolev, Natalia Gogoleva

PMC · DOI: 10.1128/mra.01169-24 · Microbiology Resource Announcements · 2025-05-22

## TL;DR

This study provides gene expression data from E. coli treated with antibiotics to better understand bacterial resistance mechanisms.

## Contribution

The novelty lies in identifying gene clusters responding to specific antibiotic treatments in E. coli.

## Key findings

- Gene clusters responding to RNA synthesis inhibition were identified.
- Genes reacting to protein synthesis inhibition were detected.
- Genes affected by DNA gyrase inhibition were found.

## Abstract

This report presents transcriptome datasets for Escherichia coli MG1655 treated with novobiocin, rifampicin, and tetracycline. Clusters of genes that respond to inhibition of RNA synthesis, protein synthesis, and DNA gyrase activity have been identified. The data may help to understand the mechanisms of general and specific resistance in E. coli.

## Linked entities

- **Chemicals:** novobiocin (PubChem CID 54675769), tetracycline (PubChem CID 54675776), rifampicin (PubChem CID 135398735)

## Full-text entities

- **Chemicals:** tetracycline (MESH:D013752), rifampicin (MESH:D012293), novobiocin (MESH:D009675)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Escherichia coli str. K-12 substr. MG1655 (no rank) [taxon 511145]
- **Cell lines:** MG1655 — Homo sapiens (Human), Maple syrup urine disease, Transformed cell line (CVCL_D514), K-12 — Felis catus (Cat), Feline mammary carcinoma, Cancer cell line (CVCL_IX41)

## Full text

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## Figures

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## References

12 references — full list in the complete paper: https://tomesphere.com/paper/PMC12160492/full.md

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Source: https://tomesphere.com/paper/PMC12160492