# SARS-CoV-2-Derived RNA Fragment Induces Myocardial Dysfunction via siRNA-like Suppression of Mitochondrial ATP Synthase

**Authors:** Shota Nukaga, Rina Fujiwara-Tani, Takuya Mori, Isao Kawahara, Ryoichi Nishida, Yoshihiro Miyagawa, Kei Goto, Hitoshi Ohmori, Kiyomu Fujii, Takamitsu Sasaki, Chie Nakashima, Yi Luo, Shiori Mori, Shingo Kishi, Ruiko Ogata, Hiroki Kuniyasu

PMC · DOI: 10.3390/ijms26115392 · International Journal of Molecular Sciences · 2025-06-04

## TL;DR

A specific RNA fragment from SARS-CoV-2 can impair heart cell function by suppressing a key mitochondrial gene, leading to heart failure-like effects.

## Contribution

Discovery of a SARS-CoV-2 RNA fragment that mimics siRNA to suppress ATP5A, linking viral RNA to mitochondrial dysfunction in heart cells.

## Key findings

- A 19-nucleotide RNA fragment from SARS-CoV-2 shares sequence homology with ATP5A and associates with AGO2.
- This RNA fragment suppresses ATP5A expression, impairing oxidative phosphorylation and causing heart failure-like phenotypes in cardiomyocytes.
- Exosome-mimetic delivery of the RNA fragment reproduces ATP5A suppression, suggesting a potential mechanism for myocardial injury.

## Abstract

Myocardial injury is a critical determinant of prognosis in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection; however, its underlying mechanisms remain incompletely understood. In this study, we examined the effects of SARS-CoV-2-derived RNA fragments on human cardiomyocytes. We identified a 19-nucleotide sequence within the viral genome that shares complete sequence homology with the human F1F0 ATP synthase subunit alpha gene (ATP5A). This sequence was found to associate with Argonaute 2 (AGO2) and downregulate ATP5A expression via a mechanism analogous to RNA interference. Consequently, oxidative phosphorylation was suppressed in cardiomyocytes, leading to impaired myocardial maturation and the emergence of heart failure-like phenotypes. Notably, exosome-mimetic liposomal delivery of this RNA fragment to cardiomyocytes reproduced the ATP5A-suppressive effect. These findings suggest that SARS-CoV-2-derived RNA fragments may contribute to myocardial injury through the siRNA-like modulation of mitochondrial gene expression. Further validation in animal models and patient-derived materials is warranted.

## Linked entities

- **Genes:** ATP5F1A (ATP synthase F1 subunit alpha) [NCBI Gene 498]
- **Proteins:** AGO2 (Argonaute 2)
- **Diseases:** heart failure (MONDO:0005252)

## Full-text entities

- **Genes:** ATP5MC1 (ATP synthase membrane subunit c locus 1) [NCBI Gene 516] {aka ATP5A, ATP5G, ATP5G1}, AGO2 (argonaute RISC catalytic component 2) [NCBI Gene 27161] {aka CASC7, EIF2C2, LESKRES, LINC00980, PPD, Q10}
- **Diseases:** Myocardial injury (MESH:D009202), Myocardial Dysfunction (MESH:D006331), heart failure (MESH:D006333)
- **Species:** Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12156209/full.md

## References

84 references — full list in the complete paper: https://tomesphere.com/paper/PMC12156209/full.md

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Source: https://tomesphere.com/paper/PMC12156209