# ADP ribosylation factor-like GTPase 6-interacting protein 5 (ARL6IP5): a prenylated Rab acceptor protein 1 (PRA1) family protein that shapes the ER membrane and regulates ER-phagy

**Authors:** Yasunori Yamamoto, Toshiaki Sakisaka

PMC · DOI: 10.1080/27694127.2025.2513466 · 2025-06-10

## TL;DR

This paper explores how ARL6IP5, a protein with a PRA1 domain, shapes the ER membrane and regulates ER-phagy, similar to ARL6IP1.

## Contribution

The paper clarifies that ARL6IP5 and ARL6IP1 are distinct ER membrane-shaping proteins despite their similar roles.

## Key findings

- ARL6IP5 constricts the ER membrane via a short hairpin configuration of its TMDs in the PRA1 domain.
- ARL6IP5 plays a redundant role with ARL6IP1 in shaping the ER membrane.
- Depletion of ARL6IP5 impairs FAM134B-mediated ER-phagy, similar to ARL6IP1 depletion.

## Abstract

The prenylated Rab acceptor protein 1 (PRA1) domain is a conserved domain encompassing four transmembrane domains (TMDs). ARL6IP5 (ADP ribosylation factor-like GTPase 6-interacting protein 5) is a member of the PRA1 family and interacts with the reticulon-homology domain (RHD)-containing proteins including ARL6IP1 (ADP ribosylation factor-like GTPase 6-interacting protein 1) and FAM134B. The RHD is a conserved domain encompassing two short hairpin TMDs and acts as a membrane-shaping unit for endoplasmic reticulum (ER) morphology and ER-phagy. However, the involvement of ARL6IP5 in ER morphology and ER-phagy remains unclear. We recently characterized ARL6IP5 as an ER membrane-shaping protein and found that ARL6IP5 constricts the ER membrane in a manner similar to ARL6IP1, possibly via short hairpin configuration of the TMDs in the PRA1 domain. ARL6IP5 also plays a redundant role with ARL6IP1 in shaping the ER membrane. Importantly, depletion of ARL6IP5 impaired FAM134B-meadited ER-phagy, which is reminiscent of ARL6IP1 depletion. These results suggested that ARL6IP5 acts as an ER membrane-shaping protein that regulates ER-phagy, underscoring the importance of the PRA1 domain. Although ARL6IP5 and ARL6IP1 are confusable protein names and seem to have similar roles in ER-phagy, we clarify in this punctum that they are distinct classes of ER membrane-shaping proteins.

## Linked entities

- **Genes:** ARL6IP5 (ARF like GTPase 6 interacting protein 5) [NCBI Gene 10550], ARL6IP1 (ARL6 interacting reticulophagy regulator 1) [NCBI Gene 23204], RETREG1 (reticulophagy regulator 1) [NCBI Gene 54463]
- **Proteins:** RABAC1 (Rab acceptor 1), RHD (Rh blood group D antigen)

## Full-text entities

- **Genes:** ARL6IP1 (ARL6 interacting reticulophagy regulator 1) [NCBI Gene 23204] {aka AIP1, ARL6IP, ARMER, SPG61}, RETREG1 (reticulophagy regulator 1) [NCBI Gene 54463] {aka FAM134B, JK-1, JK1}, RABAC1 (Rab acceptor 1) [NCBI Gene 10567] {aka PRA1, PRAF1, YIP3}, ARL6IP5 (ARF like GTPase 6 interacting protein 5) [NCBI Gene 10550] {aka DERP11, GTRAP3-18, HSPC127, JWA, PRAF3, Yip6b}

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12153386/full.md

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Source: https://tomesphere.com/paper/PMC12153386