# Small but mighty: ATG9A-positive vesicles are a branch of the intracellular nanovesicle superfamily

**Authors:** Mary Fesenko, Stephen J. Royle

PMC · DOI: 10.1080/27694127.2025.2513467 · Autophagy Reports · 2025-06-04

## TL;DR

The paper shows that ATG9A-positive vesicles are part of a larger family of intracellular transport vesicles called INVs, which is important for understanding autophagy.

## Contribution

The study clarifies that ATG9A-positive vesicles are a subset of intracellular nanovesicles (INVs), and their role in autophagy is functionally significant.

## Key findings

- ATG9A-positive vesicles are a subset of the intracellular nanovesicle (INV) family.
- Disrupting INV-mediated trafficking impairs starvation-induced autophagy.
- The study provides a framework for classifying and understanding the role of INVs in cellular processes.

## Abstract

The molecular and functional characterization of the thousands of uncoated intracellular transport vesicles inside cells is a major challenge. Intracellular nanovesicles (INVs) are a large and molecularly heterogenous family of uncoated transport vesicles, which are comprised of multiple subtypes. As a step to characterizing these subtypes, we recently published the first INV proteome and were intrigued by the enrichment of ATG9A in it. ATG9A is the only conserved transmembrane protein with a core function in macroautophagy/autophagy, and it is found on small, uncoated vesicles, termed “ATG9A-positive vesicles”. We therefore, set out to disambiguate the relationship between these two types of vesicular carriers in cells. We showed that ATG9A-containing vesicles, rather than being a distinct vesicle class, represent one subset of the INV family. We also demonstrated that this relationship is functionally important and that perturbing INV-mediated trafficking impeded starvation-induced autophagy. Here, we briefly introduce INVs, summarize the evidence supporting our definition of ATG9A-flavor INVs and present our outlook on why we hope that this classification will help to consolidate efforts to understand the functions of these vesicles in autophagy and beyond.

## Linked entities

- **Genes:** ATG9A (autophagy related 9A) [NCBI Gene 79065]
- **Proteins:** ATG9A (autophagy related 9A)

## Full-text entities

- **Genes:** INVS (inversin) [NCBI Gene 27130] {aka INV, NPH2, NPHP2}, ATG9A (autophagy related 9A) [NCBI Gene 79065] {aka APG9L1, MGD3208, mATG9}

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12143673/full.md

## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC12143673/full.md

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Source: https://tomesphere.com/paper/PMC12143673