# CD4+ T cell recognition of HIV-1 alternate reading frame proteins

**Authors:** Joel Sop, Tyler P. Beckey, Joel N. Blankson

PMC · DOI: 10.3389/fimmu.2025.1600132 · Frontiers in Immunology · 2025-05-22

## TL;DR

This study shows that HIV-1 alternate reading frame proteins can trigger CD4+ T cell responses, suggesting they may help in reversing HIV latency and could be targets for immune treatments.

## Contribution

The study identifies CD4+ T cell recognition of HIV-1 ARFPs and their potential role in latency reversal.

## Key findings

- CD4+ T cell responses to Gag ARFPs were detected in 7 out of 13 chronic progressors.
- ARFP peptides predicted to bind MHC-II were found to be immunogenic.
- HIV RNA was detected in culture supernatants after CD4+ T cell stimulation in 3 out of 6 chronic progressors.

## Abstract

HIV-1 alternative reading frame proteins (ARFPs) have been shown to elicit CD8+ T cell responses, but less is known about the recognition of these proteins by CD4+ T cells. In this study, we analyzed responses of CD8-depleted peripheral blood mononuclear cells from chronic progressors (CPs) on suppressive antiretroviral therapy to ARFP peptide pools derived from HIV Gag, polymerase (Pol), and envelope (Env) proteins. Memory CD4+ T cell responses were detected to Gag ARFP peptide pools in 7 out of 13 CPs and to Env ARFP peptide pools in 2 out of 13 CPs. Individual peptide stimulation identified immunogenic peptides that were predicted to bind to major histocompatibility complex class II (MHC-II) proteins. HIV RNA was detected in culture supernatants from 3 of 6 CPs following stimulation of CD4+ T cells with ARFP peptide pools. These findings demonstrate that ARFP-derived peptides elicit antigen-specific CD4+ T cell responses and may contribute to latency reversal. Our data expand the known HIV immunopeptidome and suggest that ARFPs may serve as potential targets for immune-based interventions.

## Linked entities

- **Proteins:** gag (Pr55(Gag)), ERVW-4 (endogenous retrovirus group W member 4), ERVW-1 (endogenous retrovirus group W member 1, envelope), H2 (histocompatibility-2, MHC)

## Full-text entities

- **Genes:** CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Env [NCBI Gene 155971], CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, gag (Pr55(Gag)) [NCBI Gene 155030]
- **Species:** Human immunodeficiency virus 1 (no rank) [taxon 11676]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12137346/full.md

## References

22 references — full list in the complete paper: https://tomesphere.com/paper/PMC12137346/full.md

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Source: https://tomesphere.com/paper/PMC12137346