# Functional loss of rffG and rfbB, encoding dTDP-glucose 4,6-dehydratase, alters colony morphology, cell shape, motility and virulence in Salmonella Typhimurium

**Authors:** Subhashish Chakraborty, Pip Banerjee, Joel P. Joseph, Sanmoy Pathak, Taru Verma, Aagosh Kishor Karhale, Deepti Chandra, Mrinmoy Das, Pritam Saha, Dipankar Nandi

PMC · DOI: 10.3389/fmicb.2025.1572117 · Frontiers in Microbiology · 2025-05-21

## TL;DR

Deleting two genes in Salmonella Typhimurium changes its shape, movement, and ability to cause disease, showing their role in cell structure and infection.

## Contribution

The study reveals the combined role of rfbB and rffG in cell morphology, motility, and virulence in Salmonella Typhimurium.

## Key findings

- Deleting both rfbB and rffG causes round cell shape and smaller colonies in Salmonella.
- The double mutant shows increased sensitivity to bile and antibiotics, and reduced virulence in mice.
- Transcriptomic analysis shows downregulation of flagellar and SPI-1 pathways in the double mutant.

## Abstract

Lipopolysaccharide (LPS) O-antigen and enterobacterial common antigen (ECA) play crucial roles in maintaining the outer membrane in Gram-negative bacteria. Mutations in the biosynthetic pathways of LPS and ECA may lead to accumulation of intermediates, resulting in morphological changes and activation of stress responses. However, the functional consequences of abrogation of both O-antigen and ECA synthesis in Salmonella enterica serovar Typhimurium (S. Typhimurium) are not well investigated. In this study, we generated single and double-deletion mutants of rfbB and rffG, encoding dTDP-glucose 4,6-dehydratase paralogs that are important in the synthesis of both O-antigen and ECA. Importantly, mutations in the dTDP-D-glucose 4,6-dehydratase encoding gene in humans are known to cause Catel-Manzke syndrome, a rare genetic disease. All four strains, i.e., wild type (WT), ΔrfbB, ΔrffG and ΔrfbBΔrffG, grew well in rich Luria Bertani (LB) liquid media at 37°C; however, the functional loss of both rfbB and rffG, but not in single-deletion strains, resulted in round cell morphology and smaller colony size in LB agar plates. There was no significant differences in the growth of the four strains in minimal media at 37°C (nutritional deficiency), in LB at 42°C (high temperature), acidic pH or LB with 3–4% NaCl (high osmolarity; however the ΔrfbBΔrffG strain was hypersensitive to bile and cell wall-targeting antibiotics). These results demonstrated that the ΔrfbBΔrffG strain was sensitive to some stress conditions. Interestingly, the ΔrfbBΔrffG strain displayed an altered LPS profile, autoaggregated rapidly compared to the WT and the single mutant strains and showed high N-phenylnaphthylamine (NPN) fluorescence indicating greater surface hydrophobicity. Furthermore, transcriptomic analysis identified flagellar and SPI-1 pathways to be highly downregulated in ΔrfbBΔrffG which led to impaired swimming as well as swarming motility, lower adhesion and invasion of HeLa cells. Importantly, the ΔrfbBΔrffG strain was less proficient in colonizing Peyer’s patches, spleen and liver, was unable to induce pro-inflammatory cytokines and was attenuated in both the oral and intraperitoneal models of S. Typhimurium infection in mice. Overall, this study highlights the importance of rfbB and rffG in maintaining cell wall and cell membrane integrity, colony and cellular morphology, motility and virulence in S. Typhimurium.

## Linked entities

- **Genes:** rfbB (dTDP-glucose 4,6-dehydratase) [NCBI Gene 915233], rffG (dTDP-glucose 4,6-dehydratase 2) [NCBI Gene 948300]
- **Chemicals:** N-phenylnaphthylamine (PubChem CID 7013), NaCl (PubChem CID 5234), bile (PubChem CID 4366058)
- **Diseases:** Catel-Manzke syndrome (MONDO:0014507)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** SPI1 (Spi-1 proto-oncogene) [NCBI Gene 6688] {aka AGM10, OF, PU.1, SFPI1, SPI-1, SPI-A}, TGDS (TDP-glucose 4,6-dehydratase) [NCBI Gene 23483] {aka CATMANS, SDR2E1, TDPGD}
- **Diseases:** Catel-Manzke syndrome (OMIM:616145), inflammatory (MESH:D007249), infection (MESH:D007239), nutritional (MESH:D044342), genetic disease (MESH:D030342)
- **Chemicals:** LPS (MESH:D008070), O-antigen (MESH:D019081), LB (-), NaCl (MESH:D012965)
- **Species:** Homo sapiens (human, species) [taxon 9606], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Salmonella enterica (species) [taxon 28901], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12136496/full.md

## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12136496/full.md

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Source: https://tomesphere.com/paper/PMC12136496