# A Japanese patient with hereditary spastic paraplegia with a rare KIF5A nonsense variant

**Authors:** Shiroh Miura, Seria Suenaga, Hana Goto, Zhaonan Wang, Akane Makino, Luoming Fan, Kensuke Senzaki, Masayuki Ochi, Yasumasa Ohyagi, Hiroki Shibata

PMC · DOI: 10.1038/s41439-025-00313-3 · Human Genome Variation · 2025-06-02

## TL;DR

A Japanese family with hereditary spastic paraplegia is linked to a rare mutation in the KIF5A gene, which causes reduced gene activity and the disease.

## Contribution

Identification of a rare KIF5A nonsense variant as causative in a Japanese family with hereditary spastic paraplegia.

## Key findings

- A KIF5A nonsense variant (c.2590C>T) was found in a patient and family members with spastic paraplegia.
- The variant led to significantly decreased KIF5A mRNA expression compared to healthy controls.
- The variant was classified as pathogenic and causative of the disease in the family.

## Abstract

Spastic paraplegia (SPG)10 is an autosomal dominant SPG caused by kinesin family member 5A (KIF5A) gene variants. We describe a Japanese patient with SPG whose deceased mother and maternal uncle also exhibited SPG. Exome analysis identified a rare KIF5A nonsense variant (NM_004984.4:c.2590C>T (p.Arg864Ter)) in the patient, regarded as pathogenic. As KIF5A mRNA expression was significantly decreased compared with that of a healthy control, the variant was deemed causative of SPG.

## Linked entities

- **Genes:** KIF5A (kinesin family member 5A) [NCBI Gene 3798]
- **Diseases:** spastic paraplegia (MONDO:0019064), hereditary spastic paraplegia (MONDO:0019064)

## Full-text entities

- **Genes:** KIF5A (kinesin family member 5A) [NCBI Gene 3798] {aka ALS25, D12S1889, MY050, NEIMY, NKHC, SPG10}
- **Diseases:** hereditary spastic paraplegia (MESH:D015419), Spastic paraplegia (SPG)10 (MESH:C537482)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.2590C>T, p.Arg864Ter

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12130483