# Backbone and side‑chain 1H, 13C and 15N resonance assignments and secondary structure determination of the rhizobial FixJ

**Authors:** Akio Horikawa, Rika Okubo, Naoki Hishikura, Riki Watanabe, Kaori Kurashima-Ito, Pooppadi Maxin Sayeesh, Kohsuke Inomata, Masaki Mishima, Hiroyasu Koteishi, Hitomi Sawai, Yoshitsugu Shiro, Teppei Ikeya, Yutaka Ito

PMC · DOI: 10.1007/s12104-025-10221-w · Biomolecular Nmr Assignments · 2025-02-01

## TL;DR

This paper studies the structure of a protein involved in nitrogen fixation in soybean bacteria.

## Contribution

The study provides resonance assignments for the unphosphorylated state of the FixJ protein.

## Key findings

- Backbone and sidechain resonance assignments were completed for unphosphorylated FixJ.
- The study aims to understand FixJ activation through phosphorylation-induced domain interactions.
- Structural differences between solution and crystal forms of FixJ are noted.

## Abstract

The symbiotic nitrogen-fixing bacterium Bradyrhizobium japonicum (B.japonicum) enables high soybean yields with little or no nitrogen fertiliser. A two component regulatory system comprising FixL, a histidine kinase with O2-sensing activity, and FixJ, a response regulator, controls the expression of genes involved in nitrogen fixation, such as fixK and nifA. Only under anaerobic conditions, the monophosphate group is transferred from FixL to the N-terminal receiver domain of FixJ (FixJN), which eventually promote the association of the C-terminal effector domain (FixJC) to the promoter regions of the nitrogen-fixation-related genes. Structural biological analyses carried out so far for rhizobial FixJ molecules have proposed a solution structure for FixJ that differs from the crystal structures, in which the two domains are extended. To understand the FixJ activation caused by phosphorylation of the N-terminal domain, which presumably regulates through the interactions between FixJN and FixJC, here we have performed backbone and sidechain resonance assignments of the unphosphorylated state of B. japonicum FixJ.

## Linked entities

- **Genes:** fixK (hypoxia transcriptional regulator FixK) [NCBI Gene 7332880], nifA (nif-specific transcriptional activator NifA) [NCBI Gene 23844872]
- **Proteins:** fixL (oxygen sensory histidine kinase FixL), fixJ (response regulator FixJ)
- **Species:** Bradyrhizobium japonicum (taxon 375)

## Full-text entities

- **Diseases:** nitrogen (MESH:D007222)
- **Species:** Bradyrhizobium japonicum (species) [taxon 375], Glycine max (soybean, species) [taxon 3847]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12116688/full.md

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Source: https://tomesphere.com/paper/PMC12116688