# Genome-wide analysis of genetic loci and candidate genes related to teat number traits in Dongliao black pigs

**Authors:** Juan Ke, Changyi Chen, Junwen Fei, Ke Luo, Yu Cheng, Huimin Yu, Chao Cheng, Yiqing Yan, Xiaoran Zhang, Shuang Liang, Hao Sun, Chunyan Bai, Boxing Sun

PMC · DOI: 10.3389/fgene.2025.1593395 · Frontiers in Genetics · 2025-05-14

## TL;DR

This study identifies genetic loci and candidate genes associated with teat number variation in Dongliao black pigs using genome-wide analysis.

## Contribution

The study provides new insights into the genetic architecture of teat number traits in a specific pig breed.

## Key findings

- Heritability estimates for total teat number and teat pair number were 0.091 and 0.097, respectively.
- Genome-wide association studies identified 74 significant SNPs for total teat number and 105 for teat pair number.
- Nine candidate genes were identified as related to teat number variation.

## Abstract

This study investigated the genetic basis of teat number variation in Dongliao black pigs. A total of 765 pigs were genotyped using the Porcine 50K SNP chip, and their teat numbers were recorded. Heritability estimates for total teat number (TTN) and teat pair number (TPN) were 0.091 and 0.097, respectively. Genome-wide association studies identified 74 significant SNPs for TTN and 105 for TPN. Nine candidate genes related to the teat number were identified: CSNK1G1, PLEKHM2, CABLES1, SLC25A21, RYR3, PIGH, GUCY1A1, RAPGEF2, and TRPC4AP. These findings provide insights into the genetic architecture of teat number variation in Dongliao black pigs.

## Linked entities

- **Genes:** CSNK1G1 (casein kinase 1 gamma 1) [NCBI Gene 53944], PLEKHM2 (pleckstrin homology and RUN domain containing M2) [NCBI Gene 23207], CABLES1 (Cdk5 and Abl enzyme substrate 1) [NCBI Gene 91768], SLC25A21 (solute carrier family 25 member 21) [NCBI Gene 89874], RYR3 (ryanodine receptor 3) [NCBI Gene 6263], PIGH (phosphatidylinositol glycan anchor biosynthesis class H) [NCBI Gene 5283], GUCY1A1 (guanylate cyclase 1 soluble subunit alpha 1) [NCBI Gene 2982], RAPGEF2 (Rap guanine nucleotide exchange factor 2) [NCBI Gene 9693], TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein) [NCBI Gene 26133]

## Full-text entities

- **Genes:** SLC25A21 (solute carrier family 25 member 21) [NCBI Gene 100515265], RAPGEF2 (Rap guanine nucleotide exchange factor 2) [NCBI Gene 100517409], RYR3 [NCBI Gene 100157806], TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein) [NCBI Gene 100156677], PIGH (phosphatidylinositol glycan anchor biosynthesis class H) [NCBI Gene 100151845], PLEKHM2 (pleckstrin homology and RUN domain containing M2) [NCBI Gene 100522681], CSNK1G1 (casein kinase 1 gamma 1) [NCBI Gene 100157196], CABLES1 (Cdk5 and Abl enzyme substrate 1) [NCBI Gene 100526114]
- **Species:** Sus scrofa (pig, species) [taxon 9823]

## Full text

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## Figures

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## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12116542/full.md

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Source: https://tomesphere.com/paper/PMC12116542