# Deep Reinforcement Learning for CT-Based Non-Invasive Prediction of SOX9 Expression in Hepatocellular Carcinoma

**Authors:** Minghui Liu, Yi Wei, Tianshu Xie, Meiyi Yang, Xuan Cheng, Lifeng Xu, Qian Li, Feng Che, Qing Xu, Bin Song, Ming Liu

PMC · DOI: 10.3390/diagnostics15101255 · Diagnostics · 2025-05-15

## TL;DR

This study uses deep reinforcement learning to predict SOX9 expression in liver cancer patients from CT scans, offering a non-invasive tool for personalized treatment.

## Contribution

A novel deep reinforcement learning model is proposed to non-invasively predict SOX9 expression in hepatocellular carcinoma using CT images.

## Key findings

- The DRL model achieved 91.00% AUC in predicting SOX9 expression, outperforming conventional methods by over 10%.
- SOX9-positive patients had significantly shorter recurrence-free and overall survival compared to SOX9-negative patients.

## Abstract

Background: The transcription factor SOX9 plays a critical role in various diseases, including hepatocellular carcinoma (HCC), and has been implicated in resistance to sorafenib treatment. Accurate assessment of SOX9 expression is important for guiding personalized therapy in HCC patients; however, a reliable non-invasive method for evaluating SOX9 status remains lacking. This study aims to develop a deep learning (DL) model capable of preoperatively and non-invasively predicting SOX9 expression from CT images in HCC patients. Methods: We retrospectively analyzed a dataset comprising 4011 CT images from 101 HCC patients who underwent surgical resection followed by sorafenib therapy at West China Hospital, Sichuan University. A deep reinforcement learning (DRL) approach was proposed to enhance prediction accuracy by identifying and focusing on image regions highly correlated with SOX9 expression, thereby reducing the impact of background noise. Results: Our DRL-based model achieved an area under the curve (AUC) of 91.00% (95% confidence interval: 88.64–93.15%), outperforming conventional DL methods by over 10%. Furthermore, survival analysis revealed that patients with SOX9-positive tumors had significantly shorter recurrence-free survival (RFS) and overall survival (OS) compared to SOX9-negative patients, highlighting the prognostic value of SOX9 status. Conclusions: This study demonstrates that a DRL-enhanced DL model can accurately and non-invasively predict SOX9 expression in HCC patients using preoperative CT images. These findings support the clinical utility of imaging-based SOX9 assessment in informing treatment strategies and prognostic evaluation for patients with advanced HCC.

## Linked entities

- **Genes:** SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662]
- **Chemicals:** sorafenib (PubChem CID 216239)
- **Diseases:** hepatocellular carcinoma (MONDO:0007256), HCC (MONDO:0007256)

## Full-text entities

- **Genes:** SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662] {aka CMD1, CMPD1, ENH13, SRA1, SRXX2, SRXY10}
- **Diseases:** tumors (MESH:D009369), HCC (MESH:D006528)
- **Chemicals:** sorafenib (MESH:D000077157)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12110404/full.md

## References

48 references — full list in the complete paper: https://tomesphere.com/paper/PMC12110404/full.md

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Source: https://tomesphere.com/paper/PMC12110404