# Bioinformatics-Guided Experimental Validation Identifies NQO1 as a Senescence-Ferroptosis Hub in Liver Fibrosis

**Authors:** Xinying Zhang, Chunmeng Fu, Ziyue Yang, Yue Tan, Huan Li, Xiangqian Zhang, Mengru Chen, Fang Peng, Ning Li

PMC · DOI: 10.3390/biomedicines13051249 · Biomedicines · 2025-05-20

## TL;DR

This study identifies NQO1 as a key gene involved in liver fibrosis, linking it to cell aging and iron-related cell death.

## Contribution

The study experimentally validates NQO1 as a novel hub gene connecting senescence and ferroptosis in liver fibrosis.

## Key findings

- NQO1 is upregulated in hepatic stellate cells and promotes fibrosis-related gene expression.
- Knockdown of NQO1 significantly affects hepatic stellate cell proliferation.
- NQO1 is strongly correlated with immune cell activity in liver fibrosis.

## Abstract

Background: As a pivotal point for the development of liver diseases, liver fibrosis (LF) is closely associated with cellular senescence and ferroptosis. However, there is a lack of effective markers that accurately predict LF status. This study aims to identify key genes involved in LF through bioinformatics analysis and experimental validation. Methods: We used bioinformatics analysis of Gene Expression Omnibus (GEO) data to investigate the gene functions, prognostic value, and immune associations of characteristic genes in LF. Functional enrichment analysis of DEGs was performed using GO and KEGG. Immune cell types and their proportions were estimated with CIBERSORTx. In addition, we analyzed the role of NQO1 in LF using IHC, WB, PCR, and flow cytometry. Results: Bioinformatics analysis identified 10 hub genes, including AR, CDKN1A, GJA1, CTSB, HIF1A, HMGB1, NQO1, PARP1, PTEN, and TXN. Among them, NQO1 was strongly correlated with immune cell activity. Experimental validation confirmed that NQO1 is upregulated and promotes αSMA and COL1A1 expression in hepatic stellate cells (HSCs). Knockdown of NQO1 significantly affected the proliferation of HSCs. Conclusions: NQO1 plays a critical role in HSC senescence and ferroptosis, promoting HSC activation and contributing to LF progression. Our findings suggest that NQO1 may serve as a potential biomarker for LF.

## Linked entities

- **Genes:** NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728], AR (androgen receptor) [NCBI Gene 367], CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026], GJA1 (gap junction protein alpha 1) [NCBI Gene 2697], CTSB (cathepsin B) [NCBI Gene 1508], HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091], HMGB1 (high mobility group box 1) [NCBI Gene 3146], PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142], PTEN (phosphatase and tensin homolog) [NCBI Gene 5728], TXN (thioredoxin) [NCBI Gene 7295], ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58], COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277]

## Full-text entities

- **Genes:** Hmgb1 (high mobility group box 1) [NCBI Gene 15289] {aka HMG-1, Hmg1, SBP-1, p30}, Fdxr (ferredoxin reductase) [NCBI Gene 14149] {aka AR}, Hif1a (hypoxia inducible factor 1, alpha subunit) [NCBI Gene 15251] {aka HIF-1-alpha, HIF1-alpha, HIF1alpha, MOP1, bHLHe78}, Cdkn1a (cyclin dependent kinase inhibitor 1A) [NCBI Gene 12575] {aka CAP20, CDKI, CIP1, Cdkn1, P21, SDI1}, Txn1 (thioredoxin 1) [NCBI Gene 22166] {aka ADF, Trx1, Txn}, Ighmbp2 (immunoglobulin mu DNA binding protein 2) [NCBI Gene 20589] {aka AEP, Catf1, RIPE3b1, Smbp-2, Smbp2, Smubp2}, Nqo1 (NAD(P)H dehydrogenase, quinone 1) [NCBI Gene 18104] {aka Dia4, Dtd, Nmo-1, Nmo1, Nmor1, Ox-1}, Ctsb (cathepsin B) [NCBI Gene 13030] {aka APPM, CB}, Gja1 (gap junction protein, alpha 1) [NCBI Gene 14609] {aka Cnx43, Cx43, Cx43alpha1, Cxnk1, Gja-1, Npm1}, Col1a1 (collagen, type I, alpha 1) [NCBI Gene 12842] {aka Col1a-1, Cola-1, Cola1, Mov-13, Mov13}, Parp1 (poly (ADP-ribose) polymerase family, member 1) [NCBI Gene 11545] {aka 5830444G22Rik, ARTD1, Adprp, Adprt1, PARP, PPOL}, Pten (phosphatase and tensin homolog) [NCBI Gene 19211] {aka 2310035O07Rik, A130070J02Rik, B430203M17Rik, MMAC1, PTENbeta, TEP1}, hubb (hyper-unconjugated bilirubinemia) [NCBI Gene 15570] {aka hub, jaundice}
- **Diseases:** liver diseases (MESH:D008107), LF (MESH:D008103)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12108982/full.md

## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12108982/full.md

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Source: https://tomesphere.com/paper/PMC12108982