# Genomics Sheds New Light on the Ancestral Bilaterian Opsin Repertoire and Suggests Rhabdomeric Phototransduction in Xenacoelomorpha

**Authors:** Samuel Abalde, Ulf Jondelius

PMC · DOI: 10.1093/gbe/evaf078 · 2025-05-26

## TL;DR

This study uses genomics to explore the evolution of light-sensing proteins in Xenacoelomorpha, revealing new insights into their opsin diversity and phototransduction mechanisms.

## Contribution

The paper presents a novel analysis of opsin evolution in Xenacoelomorpha and proposes a revised ancestral bilaterian opsin repertoire.

## Key findings

- Xenacoelomorpha have only six opsin types, with no more than three per species.
- The study identifies a cnidarian-specific opsin (Anthozoa I) and a xenacoelomorph-specific opsin.
- Xenacoelomorpha likely use rhabdomeric phototransduction despite lacking typical photoreceptors.

## Abstract

Animals use opsins, light-sensing, transmembrane proteins, to detect light, which is then converted into an electrical stimulus in the photoreceptors through a process known as phototransduction. The steady generation of genomic data has facilitated the description of the opsin diversity and photoreceptor activity in different animals. However, Xenacoelomorpha still represents an important gap in our understanding of opsin evolution from early animals. Characterized by extreme morphological simplicity, some Xenacoelomorpha present ocelli, eyespots, and even eyes with lenses, but no ciliary or rhabdomeric photoreceptors have been described. Here, we have leveraged all available genomic data from this group to characterize their opsin repertoire and to annotate the genes involved in the two main phototransduction cascades, ciliary and rhabdomeric, in these worms. Only six opsin types were found in Xenacoelomorpha, with no more than three in any given species. Among them, we annotated Anthozoa I, insofar thought to be cnidarian-specific, and another one specific to xenacoelomorphs. Despite their enigmatic position in the animal tree, we extended these findings to other animals, evaluating the two main phylogenetic hypotheses—the Nephrozoa and Xenambulacraria hypotheses. We propose that the opsin repertoire of the ancestral bilaterian was composed of either seven opsins or 11, depending on the phylogenetic hypothesis, and not nine as previously suggested. We argue that the Nephrozoa hypothesis explains opsin evolution more parsimoniously than the alternative Xenambulacraria hypothesis. Furthermore, our data also suggest that despite the lack of the typical rhabdomeric or ciliary photoreceptors, xenacoelomorphs use rhabdomeric phototransduction.

## Linked entities

- **Species:** Xenacoelomorpha (taxon 1312402), Anthozoa (taxon 6101)

## Full-text entities

- **Genes:** Arr1 (Arrestin 1) [NCBI Gene 35078] {aka 3H10, Arr, ArrA, CG5711, DA, DAI}, RHO (rhodopsin) [NCBI Gene 509933], Pde6 (Phosphodiesterase 6) [NCBI Gene 41760] {aka CG8279, DmPDE5/6, DmPDE6, Dmel\CG8279, PDE5/6}
- **Chemicals:** 11-cis-retinal (MESH:D012172), Retinol (MESH:D014801), cGMP (MESH:D006152), Chaopsins (-), calcium (MESH:D002118), lysine (MESH:D008239)
- **Species:** Notocelis gullmarensis (species) [taxon 996744], Hofstenia miamia (species) [taxon 442651], Deuterostomia (deuterostomes, clade) [taxon 33511], Chordata (chordates, phylum) [taxon 7711], Amphiscolops sp. (species) [taxon 31267], Acoela (order) [taxon 31265], Anthozoa (anthozoans, class) [taxon 6101], Hydra (genus) [taxon 6083], Drosophila melanogaster (fruit fly, species) [taxon 7227], Protostomia (clade) [taxon 33317], Nemertodermatida (order) [taxon 52050], Sipunculus nudus (marine worm, species) [taxon 6446], Bos taurus (bovine, species) [taxon 9913], Trichoplax (genus) [taxon 10227], Xenoturbella bocki (species) [taxon 242395], Praeconvoluta tigrina (species) [taxon 188030], Symsagittifera roscoffensis (species) [taxon 84072], Nemertoderma westbladi (species) [taxon 172109]
- **Mutations:** A2A

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12104807/full.md

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Source: https://tomesphere.com/paper/PMC12104807