# Infection with the entomopathogenic nematodes Steinernema alters the Drosophila melanogaster larval microbiome

**Authors:** Raymond Yau, Christina Pavloudi, Yingying Zeng, Jimmy Saw, Ioannis Eleftherianos

PMC · DOI: 10.1371/journal.pone.0323657 · PLOS One · 2025-05-16

## TL;DR

This study shows that nematode infections change the gut microbes of fruit fly larvae, which could help understand how the microbiome affects immunity.

## Contribution

The study reveals that Steinernema nematode infection alters the Drosophila larval microbiome and identifies species-specific differences in pathogenicity.

## Key findings

- S. carpocapsae is more pathogenic to Drosophila larvae than S. hermaphroditum.
- Nematode infection significantly alters the size and composition of the larval microbiome.
- The findings suggest a role for the microbiome in insect anti-nematode immune responses.

## Abstract

The fruit fly Drosophila melanogaster is a vital model for studying the microbiome due to the availability of genetic resources and procedures. To understand better the importance of microbial composition in shaping immune modulation, we can investigate the role of the microbiota through parasitic infection. For this, we use entomopathogenic nematodes (EPN) of the genus Steinernema which exhibit remarkable ability to efficiently infect a diverse array of insect species, facilitated by the mutualistic bacteria Xenorhabdus found within their gut. To examine the microbiome changes in D. melanogaster larvae in response to Steinernema nematode infection, D. melanogaster late second to early third instar larvae were exposed separately to S. carpocapsae and S. hermaphroditum infective juveniles. We have found that S. carpocapsae infective juveniles are more pathogenic to D. melanogaster larvae compared to the closely related S. hermaphroditum. Our microbiome analysis also indicates substantial changes in the size and composition of the D. melanogaster larval microbiome during infection with either nematode species compared to the uninfected controls. Our results serve as a foundation for future studies to elucidate the entomopathogenic-specific effector molecules that alter the D. melanogaster microbiome and understand the role of the microbiome in regulating insect anti-nematode immune processes.

## Linked entities

- **Species:** Drosophila melanogaster (taxon 7227), Steinernema carpocapsae (taxon 34508), Steinernema hermaphroditum (taxon 289476), Xenorhabdus (taxon 626)

## Full-text entities

- **Genes:** LysD (Lysozyme D) [NCBI Gene 38127] {aka CG9118, Dmel\CG9118, Lys}, imd (immune deficiency) [NCBI Gene 44339] {aka BG5, CG5576, Dmel\CG5576, anon-WO0172774.166, dsIMD, shadok}, Rel (Relish) [NCBI Gene 41087] {aka CG11992, Dmel\CG11992, NF-KB, NF-kappaB, NF-kappaBeta, NFkappaB}, bsk (basket) [NCBI Gene 44801] {aka Basket, CG5680, D-JNK, D-junk, DBSK/JNK, DJNK}, Tl (Toll) [NCBI Gene 43222] {aka CG5490, CT17414, Dmel\CG5490, EP(3)1051, EP1051, Fs(1)Tl}, Phox (Phenol oxidase) [NCBI Gene 8680162], InR (Insulin-like receptor) [NCBI Gene 42549] {aka 18402, CG18402, DIHR, DILR, DIR, DIRH}
- **Diseases:** respiratory infections (MESH:D012141), anxiety (MESH:D001007), parasitic diseases (MESH:D010272), fungal (MESH:D009181), Steinernema hermaphroditum infection (MESH:D007239), Steinernema nematode (MESH:D009349), pneumonia (MESH:D011014), depression (MESH:D003866), inflammation (MESH:D007249), organ damage (MESH:D000092124), post-stroke (MESH:D020521), abscess (MESH:D000038), bacteremia (MESH:D016470), cachexia (MESH:D002100), hyperglycemia (MESH:D006943)
- **Chemicals:** cholesterol (MESH:D002784), purines (MESH:D011687), esketamine (MESH:C000629870), alcohols (MESH:D000438), amino acids (MESH:D000596), lactate (MESH:D019344), acetoin (MESH:D000093), triglyceride (MESH:D014280), carbohydrates (MESH:D002241), water (MESH:D014867), agarose (MESH:D012685), lipopolysaccharides (MESH:D008070)
- **Species:** Burkholderia (genus) [taxon 32008], Leucobacter (genus) [taxon 55968], Flavobacterium (genus) [taxon 237], Photorhabdus (genus) [taxon 29487], Klugiella (genus) [taxon 580374], Mus musculus (house mouse, species) [taxon 10090], Steinernema hermaphroditum (species) [taxon 289476], Mitsuaria [taxon 65047], Morganella (genus) [taxon 108061], Ochrobactrum (genus) [taxon 528], Delftia acidovorans (species) [taxon 80866], Nubsella [taxon 565005], Petrachloros mirabilis (species) [taxon 2918835], Steinernema carpocapsae (species) [taxon 34508], Xylophilus (genus) [taxon 54066], Aedes aegypti (yellow fever mosquito, species) [taxon 7159], Achromobacter (genus) [taxon 222], Salana (genus) [taxon 120376], Acinetobacter (genus) [taxon 469], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Aquamicrobium (genus) [taxon 69278], gut metagenome (species) [taxon 749906], Serratia (genus) [taxon 613], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Steinernema weiseri (species) [taxon 374389], Agromyces (genus) [taxon 33877], Gryllotalpidae (mole crickets, family) [taxon 208677], Flavobacterium sp. CS34 (species) [taxon 582544], Shinella (genus) [taxon 323620], Homo sapiens (human, species) [taxon 9606], Acetobacter subgen. Acetobacter (subgenus) [taxon 151157], Xenorhabdus griffiniae (species) [taxon 351672], Enterobacteriaceae (enterobacteria, family) [taxon 543], Devosia (genus) [taxon 46913], Microbacterium (genus) [taxon 33882], Galleria mellonella (greater wax moth, species) [taxon 7137], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Drosophila melanogaster (fruit fly, species) [taxon 7227], Bosea (genus) [taxon 169215], Spodoptera frugiperda (fall armyworm, species) [taxon 7108], Clostridium (genus) [taxon 1485], Paenibacillus (genus) [taxon 44249], Heterorhabditis bacteriophora (species) [taxon 37862], Delia antiqua (onion fly, species) [taxon 265456], Phreatobacter (genus) [taxon 1632780], Rhodococcus (genus) [taxon 1661425], Tenebrio molitor (yellow mealworm, species) [taxon 7067], Microbacteriaceae (family) [taxon 85023], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Stenotrophomonas maltophilia (species) [taxon 40324], Bacteroidia (class) [taxon 200643], Alcaligenes (genus) [taxon 507], Carnobacterium (genus) [taxon 2747], Heterorhabditis indica (species) [taxon 51550], Sphingobacterium (genus) [taxon 28453], Steinernema feltiae (species) [taxon 52066], Xenorhabdus nematophila (species) [taxon 628], Pseudomonas (RNA similarity group I, genus) [taxon 286], Lactobacillus (genus) [taxon 1578], Reyranella (genus) [taxon 445219]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12084044/full.md

## References

76 references — full list in the complete paper: https://tomesphere.com/paper/PMC12084044/full.md

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Source: https://tomesphere.com/paper/PMC12084044