# Effect of UV-A on endophyte colonisation of Arabidopsis thaliana

**Authors:** Aleksandra Giza, Paweł Hermanowicz, Rafał Ważny, Agnieszka Domka, Piotr Rozpądek, Justyna Łabuz, Eugenio Llorens, Eugenio Llorens, Eugenio Llorens

PMC · DOI: 10.1371/journal.pone.0323576 · PLOS One · 2025-05-15

## TL;DR

This study shows that UV-A light does not significantly affect how fungi colonize Arabidopsis plants but does influence plant defense genes.

## Contribution

The study is the first to investigate the effect of UV-A radiation on Arabidopsis-endophyte interactions under physiologically relevant conditions.

## Key findings

- UV-A did not significantly affect endophyte colonization of Arabidopsis shoots and roots.
- UV-A exposure upregulated defense-related genes like PDF1.2, ICS1, and PAL1 in Arabidopsis.
- Endophyte inoculation with P. chrysanthemicola and S. ruberrimus increased ICS1 gene expression.

## Abstract

UV-A, an important part of sunlight radiation, is typically absent in experiments on plant-endophyte interactions. We examined the impact of UV-A in the 350–400 nm range (UV-A1 waveband) on the plant interactions with fungal endophytes belonging to different taxonomic groups: Paraphoma chrysanthemicola, Phomopsis columnaris, Diaporthe eres, Mucor sp., and yeast Sporobolomyces ruberrimus. Physiologically relevant levels of UV-A did not substantially affect the colonisation of shoots and roots by endophytes. UV-A upregulated the expression of genes involved in the establishment of symbiosis. Specifically, the expression of PDF1.2 was affected by P. chrysanthemicola and S. ruberrimus only under UV-A conditions. Additionally, UV-A exposure upregulated the mRNA levels of ICS1 and PAL1, genes important for plant responses to stress factors. Inoculation with P. chrysanthemicola and S. ruberrimus led to increased expression of the ICS1 gene. We did not observe significant interactions between the effects of UV-A and the presence of endophytes on other examined plant traits, including plant fresh weight, root system architecture, and expression of plant photoreceptor genes. For these physiological parameters, the effects of the presence of endophytes did not depend on UV-A supplementation. Our findings indicate that while UV-A does not substantially influence plant colonisation by the endophytes, it does trigger the upregulation of plant defence genes and affects the shoot growth of Arabidopsis.

## Linked entities

- **Genes:** PDF1.2 (plant defensin 1.2) [NCBI Gene 834469], DNAI1 (dynein axonemal intermediate chain 1) [NCBI Gene 27019], Pal1 (Peptidyl-alpha-hydroxyglycine-alpha-amidating lyase 1) [NCBI Gene 36033]
- **Species:** Arabidopsis thaliana (taxon 3702), Paraphoma chrysanthemicola (taxon 798071), Diaporthe eres (taxon 83184), Mucor sp. (taxon 1715236), Sporobolomyces ruberrimus (taxon 86828)

## Full-text entities

- **Genes:** PDF2.1 (Scorpion toxin-like knottin superfamily protein) [NCBI Gene 814743] {aka F5O4.11, F5O4_11, LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70}, CRY1 (cryptochrome 1) [NCBI Gene 826470] {aka ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRYPTOCHROME 1 APOPROTEIN (BLUE LIGHT PHOTORECEPTOR, ELONGATED HYPOCOTYL 4, HY4}, PHOT1 (phototropin 1) [NCBI Gene 823721] {aka F16L2.3, JK224, NONPHOTOTROPIC HYPOCOTYL 1, NPH1, PHOTOTROPIN, ROOT PHOTOTROPISM 1}, UVR8 (Regulator of chromosome condensation (RCC1) family protein) [NCBI Gene 836506] {aka MGI19.7, MGI19_7, UVB-RESISTANCE 8}, EDS16 (ADC synthase superfamily protein) [NCBI Gene 843810] {aka ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ATICS1, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, F25A4.31, ICS1, ISOCHORISMATE SYNTHASE}, PDF2 (protodermal factor 2) [NCBI Gene 825828] {aka T1J1.3, T1J1_3, protodermal factor 2}, ETR1 (Signal transduction histidine kinase, hybrid-type, ethylene sensor) [NCBI Gene 842951] {aka AtETR1, EIN1, ETHYLENE INSENSITIVE 1, ETHYLENE RESPONSE, ETHYLENE RESPONSE 1, ETR}, TT4 (Chalcone and stilbene synthase family protein) [NCBI Gene 831241] {aka ATCHS, CHALCONE SYNTHASE, CHALCONE/STILBENE SYNTHASE, CHS, MAC12.28, MAC12_28}, PDF1.2 (plant defensin 1.2) [NCBI Gene 834469] {aka LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, MFC16.8, MFC16_8, PDF1.2A, PLANT DEFENSIN 1.2A}, PHOT2 (phototropin 2) [NCBI Gene 835926] {aka AtPHOT2, K21L19.6, K21L19_6, NON PHOTOTROPIC HYPOCOTYL 1-LIKE, NPL1, phototropin 2}, CRY2 (cryptochrome 2) [NCBI Gene 839529] {aka AT-PHH1, ATCRY2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA}, PAL1 (PHE ammonia lyase 1) [NCBI Gene 818280] {aka ATPAL1, CI0004, PHE ammonia lyase 1, T1J8.22, T1J8_22}, CHI (chitinase) [NCBI Gene 818959] {aka ''chitinase, F18O19.32, chitinase, putative, putative''}, FAH1 (ferulic acid 5-hydroxylase 1) [NCBI Gene 829779] {aka CYP84A1, CYTOCHROME P450 84A1, F23E13.110, F23E13_110, FERULATE-5-HYDROXYLASE, ferulic acid 5-hydroxylase 1}
- **Diseases:** dysbiosis (MESH:D064806), mucormycosis (MESH:D009091), growth retardation (MESH:D006130), fungal infection (MESH:D009181)
- **Chemicals:** N (MESH:D009584), NaCl (MESH:D012965), Lipid (MESH:D008055), sodium azide (MESH:D019810), flavonol (MESH:C041477), B (MESH:D001895), ethylene (MESH:C036216), (TBA) (MESH:C029684), UVR-8 (-), FMN (MESH:D005486), jasmonate (MESH:C011006), Callose (MESH:C048306), salicylic (MESH:D020156), chloroform (MESH:D002725), lignin (MESH:D008031), Texas Red (MESH:C034657), sodium acetate (MESH:D019346), HCl (MESH:D006851), trichloroacetic acid (MESH:D014238), Flavonoids (MESH:D005419), NaOCl (MESH:D012973), EDTA (MESH:D004492), MDA (MESH:D008315), ice (MESH:D007053), KOH (MESH:C029943), isopropanol (MESH:D019840), lycopene (MESH:D000077276), water (MESH:D014867), sinapoylmalate (MESH:C079164), P (MESH:D010758), Chlorophyll (MESH:D002734), oil (MESH:D009821), perlite (MESH:C003076), FAD (MESH:D005182), malvidin 3-glucoside (MESH:C458419), methanol (MESH:D000432), auxin (MESH:D007210), carbon (MESH:D002244), Tween (MESH:D011136), chitin (MESH:D002686), Flavonols (MESH:D044948), EtOH (MESH:D000431), pterin (MESH:D011622), TE (MESH:D013691), polysaccharide (MESH:D011134), CTAB (MESH:D000077286), Phosphate (MESH:D010710), sucrose (MESH:D013395), tryptophane (MESH:D014364), Anthocyanin (MESH:D000872)
- **Species:** Homo sapiens (human, species) [taxon 9606], Fusarium oxysporum (species) [taxon 5507], Mucor (genus) [taxon 4830], Arabidopsis arenosa (species) [taxon 38785], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Diaporthe eres (species) [taxon 83184], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Paraphoma chrysanthemicola (species) [taxon 798071], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Mucor sp. (species) [taxon 1715236], Brassica sp. (species) [taxon 3717], Sporobolomyces ruberrimus (species) [taxon 86828], Deinococcus (genus) [taxon 1298], Solanum tuberosum (potatoes, species) [taxon 4113], Colobanthus quitensis (species) [taxon 552857], Nicotiana attenuata (species) [taxon 49451], Diaporthe columnaris (species) [taxon 193000], PX clade (clade) [taxon 569578], Glycine max (soybean, species) [taxon 3847], Lolium perenne (perennial ryegrass, species) [taxon 4522], Phytophthora infestans (potato late blight agent, species) [taxon 4787], Hordeum vulgare (barley, species) [taxon 4513], Cucumis sativus (cucumber, species) [taxon 3659], Botrytis cinerea (gray fruit mold, species) [taxon 40559], Brassica oleracea var. italica (asparagus broccoli, varietas) [taxon 36774], Brassica oleracea (wild cabbage, species) [taxon 3712], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Fagopyrum (genus) [taxon 3616], Solanum lycopersicum (tomato, species) [taxon 4081]

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## Figures

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## References

120 references — full list in the complete paper: https://tomesphere.com/paper/PMC12080771/full.md

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Source: https://tomesphere.com/paper/PMC12080771