# Synthesis, structural studies, and inhibitory potential of selected sulfonamide analogues: insights from in silico and in vitro analyses

**Authors:** Tahira Noor, Daniel C. Schultz, Gustavo Seabra, Yuting Zhai, Kwangcheol Casey Jeong, Saleem Ahmed Bokhari, Fahim Ashraf Qureshi, Abdul Rauf Siddiqi, Chenglong Li

PMC · DOI: 10.17179/excli2024-8118 · EXCLI Journal · 2025-04-01

## TL;DR

Researchers synthesized and tested new sulfonamide compounds to combat antibiotic resistance, finding one compound, FQ5, to be particularly effective.

## Contribution

The study introduces novel sulfonamide analogues and identifies FQ5 as a promising candidate for combating antibiotic-resistant bacteria.

## Key findings

- FQ5 showed potent antibacterial activity with MIC values of 16-32 µg/mL against tested bacterial strains.
- Molecular docking revealed that FQ5 forms strong interactions with DHPS enzyme residues.
- FQ5 demonstrated superior drug-likeness in in silico ADMET studies.

## Abstract

Antimicrobial resistance is a growing public health threat worldwide, and the current drug development pipeline has thus far been inadequate in addressing this impending crisis. Further research into antibiotic agents, both existing and novel, is therefore paramount for identifying suitable candidates to combat antibiotic-resistant pathogens. Sulfonamides, the first class of synthetic antibiotics, target dihydropteroate synthase (DHPS), a key bacterial enzyme. While this class of antibiotics has historically demonstrated great utility, their use has diminished due to resistance and undesired side effects. In the present study, we synthesized a selection of four sulfonamide analogues (FQ5, FQ6, FQ7 and FQ12), validated their structures through NMR spectroscopy, and evaluated their inhibitory potential through computational docking and MIC assays against four bacterial strains: Staphylococcus aureus ATCC 25923, Pseudomonas aeruginosa ATCC 27853, Escherichia coli ATCC 35401 and Bacillus subtilis ATCC 6633. Each compound exhibited antibacterial activity; FQ5 demonstrated the most potent activity, with an MIC of 32, 16, 16, and 16 µg/mL against aforementioned strains, respectively. FQ6, FQ7 and FQ12, on the other hand, exhibited moderate activity against P. aeruginosa and E. coli (MIC = 128 µg/mL each) and low activity against S. aureus and B. subtilis (MIC = 256 µg/mL each). Molecular docking studies indicated that FQ5 captures multiple hydrogen bonding, ionic, and π-π interactions with key binding pocket residues of DHPS, and FQ5 also demonstrated superior predicted drug-likeness in in silico ADMET studies compared to other compounds. FQ5 is therefore a favorable starting point for further optimization.

## Linked entities

- **Proteins:** DHPS (deoxyhypusine synthase)
- **Chemicals:** FQ6 (PubChem CID 54505715), FQ7 (PubChem CID 644279)
- **Species:** Staphylococcus aureus (taxon 1280), Pseudomonas aeruginosa (taxon 287), Escherichia coli (taxon 562), Bacillus subtilis (taxon 1423)

## Full-text entities

- **Genes:** ERG (ETS transcription factor ERG) [NCBI Gene 2078] {aka LMPHM14, erg-3, p55}, PGP (phosphoglycolate phosphatase) [NCBI Gene 283871] {aka AUM, G3PP, PGPase}, KCNH2 (potassium voltage-gated channel subfamily H member 2) [NCBI Gene 3757] {aka ERG-1, ERG1, H-ERG, HERG, HERG1, Kv11.1}, DHPS (deoxyhypusine synthase) [NCBI Gene 1725] {aka DHS, DS, MIG13, NEDSSWI}, DHPS [NCBI Gene 13906535], DHPS [NCBI Gene 20491868], DHFR (dihydrofolate reductase) [NCBI Gene 1719] {aka DHFR1, DYR}, ABCB1 (ATP binding cassette subfamily B member 1) [NCBI Gene 5243] {aka ABC20, CD243, CLCS, ENPAT, GP170, MDR1}
- **Diseases:** Microbial infections (MESH:D015163), diarrheal illnesses (MESH:D004403), Toxicity (MESH:D064420), infections (MESH:D007239), deaths (MESH:D003643)
- **Chemicals:** DMSO-d6 (-), Para-amino benzoic acid (MESH:D010129), sulfamethoxazole (MESH:D013420), 2H (MESH:D003903), Benzenesulfonyl chloride (MESH:C010544), o-anisidine (MESH:C003898), aniline (MESH:C023650), 6-hydroxymethyl-7,8-dihydropterin-pyrophosphate (MESH:C492819), Tosyl chloride (MESH:C025506), Na2CO3 (MESH:C005686), acetamide (MESH:C030686), H2O (MESH:D014867), acetanilide (MESH:C508827), tetrahydrofolate (MESH:C030371), 3H (MESH:D014316), sulfanilamide (MESH:D000077145), dimethyl sulfoxide (MESH:D004121), sulfates (MESH:D013431), ethanol (MESH:D000431), sulfadiazine (MESH:D013411), diethyl ether (MESH:D004986), ethyl iodide (MESH:C521551), p-toluidine (MESH:C029370), folate (MESH:D005492), 13C (MESH:C000615229), Sulfonamide (MESH:D013449), Hydrogen (MESH:D006859), pyrophosphate (MESH:C107241), dihydrofolate (MESH:C010920)
- **Species:** Bacillus subtilis (species) [taxon 1423], Homo sapiens (human, species) [taxon 9606], Staphylococcus aureus (species) [taxon 1280], Escherichia coli (E. coli, species) [taxon 562], Pseudomonas aeruginosa (species) [taxon 287], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]
- **Cell lines:** ATCC 25923 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), ATCC 27853 — Homo sapiens (Human), Transformed cell line (CVCL_ZH96)

## Full text

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## Figures

15 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12078777/full.md

## References

41 references — full list in the complete paper: https://tomesphere.com/paper/PMC12078777/full.md

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Source: https://tomesphere.com/paper/PMC12078777