# Retrospective Lineage Tracing: An Optimal Approach for the Study of Intrinsic Cellular Development

**Authors:** Alessandro Hammond, Anuj Mankad

PMC · DOI: 10.7759/cureus.82241 · Cureus · 2025-04-14

## TL;DR

This paper reviews retrospective lineage tracing, a method that uses natural genetic markers to study cell development without altering cells.

## Contribution

The paper highlights the advantages of using endogenous genetic barcodes for lineage tracing over traditional methods.

## Key findings

- Retrospective lineage tracing uses SNPs, CNVs, and mitochondrial DNA mutations to reconstruct cell lineages.
- This approach avoids the need for exogenous labeling and is useful for studying human hematopoiesis.
- It allows inference of developmental trajectories and clonal relationships in hematopoiesis and tumorigenesis.

## Abstract

Lineage tracing is an essential tool for understanding cellular development and tissue dynamics. This review examines retrospective lineage tracing as an optimal approach for studying cellular development and contrasts retrospective with prospective lineage tracing methods. Retrospective lineage tracing approaches leverage naturally occurring genetic barcodes, such as single nucleotide polymorphisms (SNPs), copy number variants (CNVs), and mitochondrial DNA mutations, which enables the detailed reconstruction of cell lineages without prior genetic manipulation. Researchers can ultimately infer developmental trajectories and clonal relationships across hematopoiesis and tumorigenesis by analyzing these endogenous markers. This paper considers how retrospective lineage tracing methods circumvent the limitations of prospective approaches, such as the need for exogenous labeling, and is valuable for studying human hematopoiesis.

## Full-text entities

- **Diseases:** chronic (MESH:D002908), tumorigenesis (MESH:D063646), lung cancer (MESH:D008175), liver conditions (MESH:D017093), Non-small Cell Lung Cancer (MESH:D002289), metastatic (MESH:D000092182), myelodysplastic syndrome (MESH:D009190), leukemia (MESH:D007938), inflammatory bowel diseases (MESH:D015212), metastasis (MESH:D009362), cancer (MESH:D009369), acute myeloid leukemia (MESH:D015470), coronary heart disease (MESH:D003327), inflammatory disorders (MESH:D007249)
- **Chemicals:** PolyLox (-)
- **Species:** Homo sapiens (human, species) [taxon 9606], Danio rerio (leopard danio, species) [taxon 7955], Mus musculus (house mouse, species) [taxon 10090]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12077648/full.md

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12077648/full.md

## References

17 references — full list in the complete paper: https://tomesphere.com/paper/PMC12077648/full.md

---
Source: https://tomesphere.com/paper/PMC12077648