# Aberrant DNMT1-mediated DACH1 methylation is associated with colorectal adenoma-to-carcinoma progression

**Authors:** Yan Zhang, Honggang Liu

PMC · DOI: 10.3389/ebm.2025.10469 · Experimental Biology and Medicine · 2025-04-30

## TL;DR

This study shows that DNMT1 causes DACH1 to be silenced through methylation, which contributes to the progression of colorectal cancer.

## Contribution

The study identifies DNMT1-mediated DACH1 methylation as a novel regulatory mechanism in colorectal cancer progression.

## Key findings

- DACH1 expression decreases while DNMT1 and DACH1 methylation increase during CRC progression.
- Higher DNMT1 and lower DACH1 levels correlate with worse clinical outcomes in CRC patients.
- Inverse expression patterns of DNMT1 and DACH1 were confirmed in paired patient tissues.

## Abstract

Colorectal cancer (CRC) remains a major contributor to cancer-related morbidity and mortality. While Dachshund homolog 1 (DACH1) was recognized as a critical regulator in cancer progression, its role in promoting or suppressing tumor development remains a subject of ongoing debate. This study aimed to elucidate the role of DACH1 in CRC progression and its underlying regulation mechanisms. The expression levels of Methyltransferase 1 (DNMT1) and DACH1, as well as its methylation status were assessed through a combination of TCGA data analysis and experimental validation using immunohistochemistry, PCR, methylation-specific PCR, and bisulfite sequencing RCR on 120 clinical samples, comprising normal mucosa, adenomas, and adenocarcinomas. The relationships among them were evaluated using Pearson or Spearman correlation analysis. The associations between the DACH1 and DNMT1 levels and clinicopathological parameters were examined to determine their clinical relevance. A progressive decrease in DACH1 expression and a concomitant increase in DACH1 promoter methylation and DNMT1 expression were observed from normal mucosa to adenoma and adenocarcinoma tissues. Higher DNMT1 expression and lower DACH1 expression were associated with poorer clinical outcomes, including worse tumor differentiation, lymphatic metastasis, and advanced tumor stages. Paired analysis of tissues from the same patient further validated their inverse expression patterns during CRC progression. DNMT1-mediated DACH1 epigenetic silencing plays a critical role in CRC progression, suggesting that the DNMT1-DACH1 regulatory axis may serve as a potential biomarker and therapeutic target in CRC.

## Linked entities

- **Genes:** DACH1 (dachshund family transcription factor 1) [NCBI Gene 1602], DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786]
- **Diseases:** colorectal cancer (MONDO:0005575), CRC (MONDO:0005575)

## Full-text entities

- **Genes:** BMP1 (bone morphogenetic protein 1) [NCBI Gene 649] {aka OI13, PCOLC, PCP, TLD}, DACH1 (dachshund family transcription factor 1) [NCBI Gene 1602] {aka DACH}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, TNS4 (tensin 4) [NCBI Gene 84951] {aka CTEN, PP14434}, SLC7A5 (solute carrier family 7 member 5) [NCBI Gene 8140] {aka 4F2LC, CD98, D16S469E, E16, LAT1, MPE16}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, SCD (stearoyl-CoA desaturase) [NCBI Gene 6319] {aka FADS5, MSTP008, SCD1, SCDOS, hSCD1}, SPARC (secreted protein acidic and cysteine rich) [NCBI Gene 6678] {aka BM-40, OI17, ON, ONT}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, MLH1 (mutL homolog 1) [NCBI Gene 4292] {aka COCA2, FCC2, HNPCC, HNPCC2, LYNCH2, MLH-1}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, PRDM2 (PR/SET domain 2) [NCBI Gene 7799] {aka HUMHOXY1, KMT8, KMT8A, MTB-ZF, RIZ, RIZ1}, UHRF1 (ubiquitin like with PHD and ring finger domains 1) [NCBI Gene 29128] {aka ICBP90, Np95, RNF106, TDRD22, hNP95, hUHRF1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}
- **Diseases:** prostatic intraepithelial neoplasia (MESH:D019048), non-small cell lung cancer (MESH:D002289), prostate cancer (MESH:D011471), precancerous lesions (MESH:D011230), colorectal adenocarcinoma (MESH:D003110), serrated lesions (MESH:D009059), adenocarcinoma (MESH:D000230), invasive carcinoma (MESH:D009361), adenoma (MESH:D000236), Tumor (MESH:D009369), Lymph node metastasis (MESH:D008207), carcinoma in situ (MESH:D002278), metastases (MESH:D009362), CRC (MESH:D015179), MLH1-deficient (MESH:D007153), tumorigenic (MESH:D002471), DUCKS (MESH:D020233), breast, prostate, and lung cancers (MESH:D001943), pancreatic ductal adenocarcinoma (MESH:D021441), lymph node (MESH:D000072717), colorectal adenoma-to-carcinoma (MESH:C563365)
- **Chemicals:** formalin (MESH:D005557), S-adenosylmethionine (MESH:D012436), hematoxylin (MESH:D006416), PVDF (MESH:C024865), paraffin (MESH:D010232), chloroform (MESH:D002725), Sephadex (MESH:C025614), xylene (MESH:D014992), bisulfite (MESH:C042345), DAB (MESH:C000469), 5-azacytidine (MESH:D001374), phenol (MESH:D019800), TRIzol (MESH:C411644), sodium citrate (MESH:D000077559), PBS (MESH:D007854), 5-Aza-2'-deoxycytidine (MESH:D000077209), Lipofectamine 2000 (MESH:C086724), ethanol (MESH:D000431), hydrogen peroxide (MESH:D006861)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** Escherichia coli — Mus musculus (Mouse), Hybridoma (CVCL_C5CN), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), 293 T — Homo sapiens (Human), Transformed cell line (CVCL_0063), HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12075005/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12075005/full.md

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Source: https://tomesphere.com/paper/PMC12075005