# Unraveling the role of histone acetylation in sepsis biomarker discovery

**Authors:** Feng Cheng, Juxin Deng, Zhaoyang Du, Lei Li, Zhaolei Qiu, Min Zhu, Hongchang Zhao, Zhenjie Wang

PMC · DOI: 10.3389/fmolb.2025.1582181 · Frontiers in Molecular Biosciences · 2025-04-30

## TL;DR

This study explores how histone acetylation influences sepsis and identifies new biomarkers that could improve diagnosis and treatment.

## Contribution

The study introduces novel sepsis biomarkers linked to histone acetylation and immune dysregulation.

## Key findings

- BLOC1S1, NDUFA1, and SFT2D1 were identified as key sepsis biomarkers.
- SFT2D1 was confirmed as a causal factor in sepsis through Mendelian randomization.
- Knockdown of SFT2D1 reduced pro-inflammatory markers like CXCL10 and IL-6.

## Abstract

Sepsis is a life-threatening condition caused by a dysregulated immune response to infection. Despite advances in clinical care, effective biomarkers for early diagnosis and prognosis remain lacking. Emerging evidence suggests that histone acetylation plays a crucial role in the pathophysiology of sepsis.

Transcriptomic and single-cell RNA sequencing data were used to identify histone acetylation-related genes. Differential expression analysis and weighted gene co-expression network analysis (WGCNA) were performed, followed by machine learning algorithms (LASSO, SVM-RFE, and Boruta) to screen for potential biomarkers. Mendelian randomization (MR), RT-qPCR, and functional assays were conducted for validation.

BLOC1S1, NDUFA1, and SFT2D1 were identified as key biomarkers. A predictive nomogram demonstrated strong diagnostic potential. Immune infiltration and single-cell analyses linked the biomarkers to macrophage activity. MR analysis confirmed SFT2D1 as a causal factor in sepsis. Functional assays showed that knockdown of SFT2D1 suppressed CXCL10 and IL-6 expression, indicating its pro-inflammatory role.

This study identifies novel biomarkers associated with histone acetylation and immune dysregulation in sepsis. These findings deepen our understanding of sepsis pathogenesis and may facilitate the development of improved diagnostic and therapeutic strategies.

## Linked entities

- **Genes:** BLOC1S1 (biogenesis of lysosomal organelles complex 1 subunit 1) [NCBI Gene 2647], NDUFA1 (NADH:ubiquinone oxidoreductase subunit A1) [NCBI Gene 4694], SFT2D1 (SFT2 domain containing 1) [NCBI Gene 113402], CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627], IL6 (interleukin 6) [NCBI Gene 3569]

## Full-text entities

- **Genes:** MIR498 (microRNA 498) [NCBI Gene 574460] {aka MIRN498, hsa-mir-498, mir-498}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, CXCL9 (C-X-C motif chemokine ligand 9) [NCBI Gene 4283] {aka CMK, Humig, MIG, SCYB9, crg-10}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, MIR325 (microRNA 325) [NCBI Gene 442899] {aka MIRN325, hsa-mir-325}, OIP5-AS1 (OIP5 antisense RNA 1) [NCBI Gene 729082] {aka OIP5, cyrano, linc-OIP5}, FOXC1 (forkhead box C1) [NCBI Gene 2296] {aka ARA, ASGD3, FKHL7, FREAC-3, FREAC3, IGDA}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, RPS24 (ribosomal protein S24) [NCBI Gene 6229] {aka DBA3, S24, eS24}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, TLR2 (toll like receptor 2) [NCBI Gene 7097] {aka CD282, TIL4}, MYH9 (myosin heavy chain 9) [NCBI Gene 4627] {aka BDPLT6, DFNA17, EPSTS, FTNS, MATINS, MHA}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, NDUFA1 (NADH:ubiquinone oxidoreductase subunit A1) [NCBI Gene 4694] {aka CI-MWFE, MC1DN12, MWFE, ZNF183}, SEPHS2 (selenophosphate synthetase 2) [NCBI Gene 22928] {aka SPS2}, COX5B (cytochrome c oxidase subunit 5B) [NCBI Gene 1329] {aka COXVB}, UFD1 (ubiquitin recognition factor in ER associated degradation 1) [NCBI Gene 7353] {aka UFD1L}, BLOC1S1 (biogenesis of lysosomal organelles complex 1 subunit 1) [NCBI Gene 2647] {aka BLOS1, BORCS1, GCN5L1, MICoA, RT14}, AGER (advanced glycosylation end-product specific receptor) [NCBI Gene 177] {aka RAGE, SCARJ1, sRAGE}, RALY-AS1 (RALY antisense RNA 1) [NCBI Gene 101926888], SFT2D1 (SFT2 domain containing 1) [NCBI Gene 113402] {aka C6orf83, pRGR1}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, GATA2 (GATA binding protein 2) [NCBI Gene 2624] {aka DCML, IMD21, MONOMAC, NFE1B}, CXCL11 (C-X-C motif chemokine ligand 11) [NCBI Gene 6373] {aka H174, I-TAC, IP-9, IP9, SCYB11, SCYB9B}, NORAD (non-coding RNA activated by DNA damage) [NCBI Gene 647979] {aka LINC00657}, JTB (jumping translocation breakpoint) [NCBI Gene 10899] {aka HJTB, HSPC222, PAR, hJT}, ETFA (electron transfer flavoprotein subunit alpha) [NCBI Gene 2108] {aka EMA, GA2, MADD}, LINC02915 (long intergenic non-protein coding RNA 2915) [NCBI Gene 400360] {aka C15orf54}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, XIST (X inactive specific transcript) [NCBI Gene 7503] {aka DXS1089, DXS399E, LINC00001, NCRNA00001, SXI1, swd66}, ZMAT2 (zinc finger matrin-type 2) [NCBI Gene 153527] {aka Ptg-12, Snu23}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}
- **Diseases:** cardiovascular disease (MESH:D002318), rheumatoid factor (MESH:D001171), anti-citrullinated protein (MESH:C536207), metabolic dysregulation (MESH:D021081), mitochondrial dysfunction (MESH:D028361), type 2 diabetes mellitus (MESH:D003924), rheumatoid arthritis (MESH:D001172), psoriasis (MESH:D011565), infected (MESH:D007239), immunological dysregulation (MESH:D007154), hepatocellular carcinoma (MESH:D006528), malignant tumors (MESH:D009369), autoimmune diseases (MESH:D001327), death (MESH:D003643), Immune dysregulation (OMIM:614878), cervical cancer (MESH:D002583), aseptic inflammation (MESH:D007249), hematological disorders (MESH:D006402), cervical and pancreatic cancers (MESH:D010190), neurodegenerative diseases (MESH:D019636), Sepsis (MESH:D018805), trauma (MESH:D014947), chronic organ dysfunction (MESH:D009102), latent autoimmune diabetes (MESH:D000071698)
- **Chemicals:** alachlor (MESH:C000188), GLU (MESH:D018698), penicillin (MESH:D010406), LPS (MESH:D008070), ATP (MESH:D000255), PMA (MESH:D013755), CO2 (MESH:D002245), GLN-24 (-), streptomycin (MESH:D013307), LYS- (MESH:D008239), Sorafenib (MESH:D000077157), ARG (MESH:D001120), hydrogen (MESH:D006859), Palmitic Acid (MESH:D019308), TRIzol (MESH:C411644), acetyl-CoA (MESH:D000105), Lipofectamine (MESH:C086724), PRO- (MESH:D011392)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** S55A
- **Cell lines:** THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006)

## Full text

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## Figures

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## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC12074977/full.md

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Source: https://tomesphere.com/paper/PMC12074977