# Epigenetic Silencing of miR-218-5p Modulates BIRC5 and DDX21 Expression to Promote Colorectal Cancer Progression

**Authors:** Hibah Shaath, Radhakrishnan Vishnubalaji, Khalid Ouararhni, Nehad M. Alajez

PMC · DOI: 10.3390/ijms26094146 · 2025-04-27

## TL;DR

This study shows that the microRNA miR-218-5p is silenced in colorectal cancer, contributing to cancer progression by affecting key genes.

## Contribution

The study identifies miR-218-5p as a tumor suppressor silenced by epigenetic changes in colorectal cancer.

## Key findings

- miR-218-5p is significantly downregulated in adenomatous polyps and colorectal cancer.
- miR-218-5p targets BIRC5 and DDX21 genes, validated through RNA-Seq and PCR.
- Epigenetic silencing of miR-218-5p occurs via promoter hypermethylation in CRC cell models.

## Abstract

Colorectal cancer remains one of the leading causes of cancer-related deaths globally. Non-protein coding RNAs, including microRNAs, have emerged as crucial regulators in cancer progression. Herein, we analyzed publicly available datasets for miRNA expression in healthy controls, adenomatous polyps, and colorectal cancer and identified their regulatory networks using HCT116 and HT-29 CRC models. Differentially expressed miRNAs in adenomatous polyps and colorectal cancer were identified, highlighting their role in colorectal cancer initiation and progression. Notably, miR-218-5p was significantly downregulated in adenomatous polyps and colorectal cancer, suggesting a role in colorectal cancer initiation. Functional investigations revealed a tumor suppressive role for miR-218-5p in HCT116 and HT-29 CRC cell models, affecting cell proliferation and three-dimensional organoid formation and promoting cell death. RNA-Seq and bioinformatics identified BIRC5 and DDX21 as bona fide gene targets for miR-218-5p, validated by reverse transcription quantitative PCR and Western blotting. Further investigation into the genomic location of miR-218-5p, embedded within the SLIT2 and SLIT3 introns on chromosome 4 and chromosome 5, respectively, revealed epigenetic silencing through promoter hypermethylation in colorectal cancer cell models. These findings highlight epigenetic silencing of miR-218-5p in colorectal cancer, suggesting its potential as a biomarker and therapeutic target for early detection and intervention.

## Linked entities

- **Genes:** BIRC5 (baculoviral IAP repeat containing 5) [NCBI Gene 332], DDX21 (DExD-box helicase 21) [NCBI Gene 9188], SLIT2 (slit guidance ligand 2) [NCBI Gene 9353], SLIT3 (slit guidance ligand 3) [NCBI Gene 6586]
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** SLIT2 (slit guidance ligand 2) [NCBI Gene 9353] {aka SLIL3, Slit-2}, SLIT3 (slit guidance ligand 3) [NCBI Gene 6586] {aka MEGF5, SLIL2, SLIT1, Slit-3, slit2}, BIRC5 (baculoviral IAP repeat containing 5) [NCBI Gene 332] {aka API4, EPR-1}, DDX21 (DExD-box helicase 21) [NCBI Gene 9188] {aka GUA, GURDB, II/Gu, RH, RH II/Gu, RH-II/GU}
- **Diseases:** cancer (MESH:D009369), adenomatous polyps (MESH:D018256), CRC (MESH:D015179)
- **Cell lines:** HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12071466/full.md

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Source: https://tomesphere.com/paper/PMC12071466