# IRF4 contributes to chemoresistance in IGH::BCL2‐positive diffuse large B‐cell lymphomas by mediating BCL2‐induced SOX9 expression

**Authors:** Yirong Zhang, Zizhen Xu, Ruixin Sun, Yixuan Gao, Innocent Agida, Kasimujiang Aximujiang, Lin Yuan, Jiao Ma

PMC · DOI: 10.1002/ctm2.70336 · Clinical and Translational Medicine · 2025-05-12

## TL;DR

This study shows that IRF4 helps BCL2-positive lymphomas resist chemotherapy by increasing SOX9 levels, suggesting IRF4 could be a new treatment target.

## Contribution

The paper identifies IRF4 as a novel mediator of BCL2-induced SOX9 expression in DLBCL, linking it to chemoresistance.

## Key findings

- SOX9 increases chemoresistance in BCL2-overexpressing DLBCL.
- IRF4 is a key regulator of BCL2-induced SOX9 expression.
- Inhibiting IRF4 reduces lymphomagenesis and chemoresistance in DLBCL models.

## Abstract

Diffuse large B‐cell lymphoma (DLBCL), an aggressive type of non‐Hodgkin's lymphoma, has a high relapse/refractory rate. We previously identified sex‐determining region Y (SRY)‐box transcription factor (SOX9) as a transcription factor that serves as a prognostic biomarker, particularly in BCL2‐overexpressing DLBCL, and plays a vital role in lymphomagenesis. However, the molecular mechanisms that modulate the aberrant expression of SOX9 in this DLBCL subset remain unknown.

Cell viability, apoptosis and cell cycle assays were performed to determine whether SOX9 contributes to DLBCL chemoresistance and rescues silencing IRF4‐induced phenotypes. Protein‒protein interactions and protein ubiquitination were elucidated using immunoprecipitation, immunohistochemistry, immunofluorescence and immunoblotting. Chromatin immunoprecipitation sequencing (ChIP‐seq), ChIP and dual‐luciferase reporter assays were used to investigate IRF4 binding to the SOX9 promoter. The therapeutic potential of IRF4 inhibition was evaluated in vitro and in a mouse model of DLBCL xenografts.

SOX9 enhanced the resistance of the BCL2‐overexpressing DLBCL subset to chemotherapy or a BCL2 inhibitor. Moreover, BCL2 inhibition downregulated SOX9 in an immunoglobulin heavy chain/BCL2‐positive DLBCL subset. We further identified IRF4 as a key regulator of BCL2‐induced SOX9 expression, and ChIP‐seq confirmed that IRF4 is a key transcription factor for SOX9 in DLBCL. In addition, BCL2 promotes IRF4 entry into the nucleus by enhancing protein stability and downregulating proteasomal ubiquitination, thereby enforcing SOX9‐mediated phenotypes. Finally, in a DLBCL cell line and xenografted mouse model, in vivo inhibition of IRF4 with an hIRF4 antisense oligonucleotide repressed lymphomagenesis and DLBCL chemoresistance.

Our data support the conclusion that IRF4 plays an essential role in BCL2‐induced upregulation of SOX9 expression, and targeting IRF4 may represent a promising therapeutic strategy to cure relapsed and refractory DLBCL.

BCL2 activated IRF4 by enhancing its nuclear activity to induce sex‐determining region Y (SRY)‐box 9 protein (SOX9) aberrant expression, which is a critical pathway for drug resistance in BCL2‐overexpressing diffuse large B‐cell lymphoma (DLBCL).Targeting IRF4 may be worth investigating further regarding its potential to overcome the chemoresistance of BCL2‐overexpressing DLBCL to standard therapies.

BCL2 activated IRF4 by enhancing its nuclear activity to induce sex‐determining region Y (SRY)‐box 9 protein (SOX9) aberrant expression, which is a critical pathway for drug resistance in BCL2‐overexpressing diffuse large B‐cell lymphoma (DLBCL).

Targeting IRF4 may be worth investigating further regarding its potential to overcome the chemoresistance of BCL2‐overexpressing DLBCL to standard therapies.

## Linked entities

- **Genes:** SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596], IRF4 (interferon regulatory factor 4) [NCBI Gene 3662], SRY (sex determining region Y) [NCBI Gene 6736]
- **Proteins:** SOX9 (SRY-box transcription factor 9), BCL2 (BCL2 apoptosis regulator), IRF4 (interferon regulatory factor 4)
- **Diseases:** diffuse large B-cell lymphoma (MONDO:0018905), non-Hodgkin's lymphoma (MONDO:0018908)

## Full-text entities

- **Genes:** Irf4 (interferon regulatory factor 4) [NCBI Gene 16364] {aka IRF-4, LSIRF, NF-EM5, Spip}, Sox9 (SRY (sex determining region Y)-box 9) [NCBI Gene 20682] {aka 2010306G03Rik, mKIAA4243, mSox9}, Bcl2 (B cell leukemia/lymphoma 2) [NCBI Gene 12043] {aka Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik}, Ighv2-3 (immunoglobulin heavy variable 2-3) [NCBI Gene 238412] {aka Gm16948}
- **Diseases:** DLBCL (MESH:D016403), non-Hodgkin's lymphoma (MESH:D008228)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12069798/full.md

## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC12069798/full.md

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Source: https://tomesphere.com/paper/PMC12069798