# Molecular dynamics simulations of atmospherically relevant molecular clusters: a case study of nitrate ion complexes

**Authors:** Christopher David Daub, Theo Kurtén, Matti Rissanen

PMC · DOI: 10.1039/d5cp00908a · Physical Chemistry Chemical Physics · 2025-05-01

## TL;DR

This paper uses simulations to study how nitrate ion complexes break apart in different conditions, which helps improve mass spectrometry techniques.

## Contribution

The study provides new insights into the decomposition mechanisms of nitrate ion complexes under various environmental conditions.

## Key findings

- Simulations reveal thermal decomposition behaviors of catechol–NO3− clusters in vacuo.
- Electric-field induced collisions significantly affect the decomposition process in the presence of nitrogen gas.

## Abstract

The formation and decomposition of complexes of ions with atmospheric analyte molecules are key processes in chemical ionization mass spectrometry (CIMS) instruments, as well as in atmospheric new particle formation (NPF). In this study, we conduct extensive molecular dynamics (MD) simulations of the decomposition of already-formed molecular complexes with nitrate ions (NO3−). We study purely thermal decomposition in vacuo and in the presence of nitrogen gas, as well as the decomposition driven by electric-field induced collisions with nitrogen gas. Our findings are relevant to improving the understanding of basic processes taking place in CIMS as well as in other MS instruments more generally.

Simulated lifetimes of catechol–NO3− clusters in vacuo and in electric field + bath gas.

## Linked entities

- **Chemicals:** nitrate (PubChem CID 943), catechol (PubChem CID 289), nitrogen gas (PubChem CID 947)

## Full-text entities

- **Diseases:** MS (MESH:D009103)
- **Chemicals:** nitrogen (MESH:D009584), nitrate (MESH:D009566), NO3- (MESH:C038619)

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12067874/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12067874/full.md

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Source: https://tomesphere.com/paper/PMC12067874