# Ex vivo quantification of intracellular pH in Drosophila Malpighian tubule reveals basolateral HCO3 −/oxalate exchange through a novel oxalate transporter “Neat”

**Authors:** Adam J. Rossano, Lili Zhang, Jacob B. Anderson, Heather L. Holmes, Asim K. Mandal, James W. Decker, David B. Mount, Michael F. Romero

PMC · DOI: 10.3389/fphys.2025.1468451 · Frontiers in Physiology · 2025-04-28

## TL;DR

This study identifies a new oxalate transporter in fruit fly kidney-like structures, which may help understand kidney stone formation.

## Contribution

The paper discovers and characterizes a novel oxalate transporter, Neat, in Drosophila Malpighian tubules.

## Key findings

- Neat transports oxalate in a Cl−-independent and electroneutral manner in Xenopus oocytes.
- Neat knockdown reduces acid-loading and calcium oxalate crystal formation in Drosophila tubules.
- Basolateral oxalate transport is functionally linked to acid equivalents movement.

## Abstract

Nephrolithiasis is a painful and costly healthcare complication. The most common kidney stones are composed of calcium oxalate and thus renal handling of oxalate is an important facet of understanding the pathogenesis of nephrolithiasis. Recently, the Drosophila melanogaster Malpighian tubule (MT) has emerged as a robust model of trans-epithelial ion transport and nephrolithiasis as MTs readily form luminal calcium-oxalate crystals in the presence of oxalate. Drosophila Prestin (dPrestin, Slc26a6) transports oxalate across the apical surface of the MT into the lumen but a full model of the trans-epithelial movement of oxalate (Ox2−) in the Drosophila MT has been lacking as the basolateral oxalate transporter has remained uncharacterized.

The objective of this work was to identify and characterize the Drosophila basolateral Ox2− transporter through ex vivo real-time quantification of intracellular pH (pHi) and Xenopus oocyte transport assays.

A putative basolateral oxalate transporter CG5002 (“Neat”) was identified through sequence homology and displayed robust Cl−-independent Ox2− transport and electroneutral Ox2− transport in Xenopus oocytes. pHi in extracted fly MTs was monitored by using the GAL4/UAS system to selectively express pHerry, a pseudo-ratiometric genetically-encoded pH indicator (GEpHI) in the cytosol of the principal cells of the MT. Basolateral perfusion of MTs in CO2/HCO3
−-buffered solution produced a large acidification followed by rapid recovery in the transitional segment of the anterior MT. Recovery was interrupted by basolateral application of 1 mM Ox2− or 1 mM SO4
2. Tissue specific knock-down of Neat with interference RNA (RNAi) reduced the rate of acid-loading in the transitional segment of the MT with regard to Ox2− and SO4
2−. Knockdown of Neat in the MT also significantly reduced luminal calcium oxalate crystal formation in a fly ex vivo model of calcium oxalate nephrolithiasis.

These data indicate Neat is a significant Drosophila basolateral MT oxalate transporter and the basolateral movement of oxalate is functionally coupled to movement of acid equivalents, potentially as Ox2−/HCO3
− exchange, Ox2−/OH− exchange, or Ox2−:H+ co-transport.

## Linked entities

- **Genes:** Prestin (prestin) [NCBI Gene 39996], SLC26A6 (solute carrier family 26 member 6) [NCBI Gene 65010], CG5002 (uncharacterized protein) [NCBI Gene 37025]
- **Chemicals:** oxalate (PubChem CID 71081), calcium oxalate (PubChem CID 33005), CO2 (PubChem CID 280), HCO3− (PubChem CID 769), Cl− (PubChem CID 312), SO42− (PubChem CID 1117)
- **Diseases:** nephrolithiasis (MONDO:0008171)
- **Species:** Drosophila melanogaster (taxon 7227), Xenopus (taxon 8353)

## Full-text entities

- **Genes:** Prestin (prestin) [NCBI Gene 39996] {aka CG5485, CG5845, Dmel\CG5485, Slc26a5, dPrestin, dpres}, CG5002 (uncharacterized protein) [NCBI Gene 37025] {aka Dmel\CG5002}
- **Diseases:** kidney stones (MESH:D007669), calcium oxalate (MESH:C563477), Nephrolithiasis (MESH:D053040)
- **Species:** Xenopus laevis (African clawed frog, species) [taxon 8355], Drosophila melanogaster (fruit fly, species) [taxon 7227]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12066474/full.md

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12066474/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12066474/full.md

---
Source: https://tomesphere.com/paper/PMC12066474