# Key gene screening and diagnostic model establishment for acute type a aortic dissection

**Authors:** Yue Pan, Zhiming Yu, Xiaoyu Qian, Xuesong Zhang, Qun Xue, Weizhang Xiao

PMC · DOI: 10.3389/fgene.2025.1586880 · Frontiers in Genetics · 2025-04-24

## TL;DR

This study identifies key genes and develops a diagnostic model for acute type A aortic dissection, aiming to improve early detection and outcomes.

## Contribution

A multi-omics diagnostic model and six core genes for acute type A aortic dissection are identified and validated.

## Key findings

- Six core genes (Ccl2, Cdh8, Hk2, Tph1, Npy1r, Slc24a4) are linked to ATAAD pathogenesis.
- The nomogram model shows high diagnostic accuracy (AUC=0.935) for ATAAD.
- Immune cell infiltration correlates negatively with core gene expression in ATAAD tissues.

## Abstract

Aortic dissection, particularly acute type A aortic dissection (ATAAD), is a life-threatening cardiovascular emergency with alarmingly high mortality rates globally. Despite advancements in imaging techniques like computed tomography angiography (CTA), delayed diagnosis and incomplete understanding of molecular mechanisms persist, contributing to poor outcomes. Recent studies highlight the role of immune dysregulation, vascular smooth muscle cell (VSMC) apoptosis, and metabolic-epigenetic interactions in AD pathogenesis, underscoring the need for novel biomarkers and therapeutic targets.

This study aims to identify critical genes and molecular pathways associated with ATAAD, develop a multi-omics diagnostic model, and evaluate potential therapeutic interventions to improve clinical outcomes.

Transcriptome datasets from the Gene Expression Omnibus (GEO) database were analyzed using differential expression analysis, weighted gene co-expression network analysis (WGCNA), and machine learning algorithms (SVM, Random Forest, LASSO regression). Functional enrichment and immunoinfiltration analyses were performed to explore biological pathways and immune cell interactions. External dataset validation and PCR testing of clinical samples (n = 9) were conducted to confirm gene expression differences. A nomogram diagnostic model was constructed and evaluated for predictive accuracy.

Six core genes were identified: Ccl2, Cdh8, Hk2, Tph1, Npy1r, and Slc24a4, with four (Ccl2, Hk2, Tph1, and Npy1r) showing significant differential expression in clinical validation. Functional enrichment revealed associations with immune cell migration, vascular development regulation, extracellular matrix pathways, and the PI3K-Akt signaling pathway. Immunoinfiltration analysis demonstrated increased infiltration of B cell precursors, resting NK cells, and M2 macrophages in ATAAD tissues, negatively correlating with core gene expression. The nomogram model exhibited high diagnostic precision (AUC=0.935, 95% CI: 0.908–0.963), supported by calibration and decision curve analyses.

This study identifies key molecular markers and pathways in ATAAD pathogenesis, emphasizing the role of immune dysregulation and extracellular matrix remodeling. The multi-omics diagnostic model provides a novel tool for early screening, potentially reducing mortality through timely intervention. These findings advance the understanding of aortic dissection mechanisms and offer actionable targets for future research and clinical applications.

## Linked entities

- **Genes:** CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347], CDH8 (cadherin 8) [NCBI Gene 1006], HK2 (hexokinase 2) [NCBI Gene 3099], TPH1 (tryptophan hydroxylase 1) [NCBI Gene 7166], NPY1R (neuropeptide Y receptor Y1) [NCBI Gene 4886], SLC24A4 (solute carrier family 24 member 4) [NCBI Gene 123041]

## Full-text entities

- **Genes:** NPY1R (neuropeptide Y receptor Y1) [NCBI Gene 4886] {aka NPY1-R, NPYR}, HK2 (hexokinase 2) [NCBI Gene 3099] {aka HKII, HXK2}, CDH8 (cadherin 8) [NCBI Gene 1006] {aka Nbla04261}, SLC24A4 (solute carrier family 24 member 4) [NCBI Gene 123041] {aka AI2A5, NCKX4, SHEP6}, TPH1 (tryptophan hydroxylase 1) [NCBI Gene 7166] {aka TPRH, TRPH}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}
- **Diseases:** Aortic dissection (MESH:D000784), AD (MESH:D000544), ATAAD (MESH:D000094683)

## Full text

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## Figures

13 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12058692/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12058692/full.md

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Source: https://tomesphere.com/paper/PMC12058692