# Long term follow-up of multiorgan disease in Kleefstra syndrome 2 in an adult – case report

**Authors:** Zhiyong Chen, Jia Liang Kwek, Ru Sin Lim, Yan Rong Yong, Alwin Hwai Liang Loh, Weng Khong Lim, Jing Xian Teo, Karine Su Shan Tay, Peng Soon Ng

PMC · DOI: 10.1186/s12883-025-04210-8 · 2025-05-06

## TL;DR

This case report describes a 10-year follow-up of a patient with Kleefstra syndrome 2, highlighting new multi-organ complications like kidney disease and stroke-like episodes.

## Contribution

The report presents previously unreported multi-organ manifestations in Kleefstra syndrome 2, expanding its known clinical spectrum.

## Key findings

- The patient developed focal segmental glomerular sclerosis and proteinuria over time.
- Stroke-like episodes with neurological symptoms partially responded to arginine infusions.
- A novel pathogenic variant in the KMT2C gene was identified through exome sequencing.

## Abstract

The Kleefstra syndrome spectrum (KSS) is a group of neurodevelopmental disorders characterized by intellectual disability, behavioral disorders, growth and neurodevelopmental delay, facial dysmorphism and neurological deficits. Kleefstra syndrome 2 (KLEFS2) is a part of KSS and is due to heterozygous loss-of-function variants in the KMT2 C gene. We report the long-term clinical course and multi-organ manifestations of a patient with KLEFS2 caused by a novel heterozygous pathogenic variant in KMT2 C.

A patient with KSS phenotype developed proteinuria with progressive kidney dysfunction secondary to focal segmental glomerular sclerosis. She subsequently developed recurrent episodes that mimicked mitochondrial stroke-like episodes. The phenotype included encephalopathy, stroke-like episodes with focal status epilepticus with impaired consciousness associated with cortical and subcortical T2/FLAIR signal hyperintensities that partially responded to intravenous arginine infusions.

Exome sequencing revealed a heterozygous pathogenic nonsense variant in KMT2 C (NM_170606.3) c.3940C > T (p.Gln1314Ter). Nuclear and mitochondrial DNA variants associated with mitochondrial disorders have been excluded.

This is a case of KLEFS2 with longitudinal 10 year follow up and its previously unreported multi-organ clinical manifestations including stroke-like episodes and nephrotic disease. Our report further expands the phenotypic spectrum of KLEFS2. Further reports of patients with KLEFS2 with multi-organ involvement should be sought to confirm our findings.

The online version contains supplementary material available at 10.1186/s12883-025-04210-8.

## Linked entities

- **Genes:** KMT2C (lysine methyltransferase 2C) [NCBI Gene 58508]
- **Chemicals:** arginine (PubChem CID 232)
- **Diseases:** Kleefstra syndrome 2 (MONDO:0054701), encephalopathy (MONDO:0005560)

## Full-text entities

- **Genes:** KMT2C (lysine methyltransferase 2C) [NCBI Gene 58508] {aka HALR, KLEFS2, MLL3}
- **Diseases:** proteinuria (MESH:D011507), neurodevelopmental delay (MESH:D006968), impaired consciousness (MESH:D003244), multiorgan disease (MESH:D004194), intellectual disability (MESH:D008607), encephalopathy (MESH:D001927), neurodevelopmental disorders (MESH:D002658), KLEFS2 (MESH:C563043), focal segmental glomerular sclerosis (MESH:D005923), neurological deficits (MESH:D009461), facial dysmorphism (MESH:C565579), kidney dysfunction (MESH:D007674), status epilepticus (MESH:D013226), mitochondrial disorders (MESH:D028361), mitochondrial stroke (MESH:D020521), behavioral disorders (MESH:D001523), nephrotic disease (MESH:D009404)
- **Chemicals:** arginine (MESH:D001120)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.Gln1314Ter, c.3940C > T

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12057049/full.md

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Source: https://tomesphere.com/paper/PMC12057049