# The role of CSNK1A1 and its de novo mutations in infantile spasms syndrome

**Authors:** Decheng Ren, Zhenxi Yang, Juan Hu, Lei Ji, Yan Bi, Fan Yuan, Yang Yan, Jing Peng, Keyi Li, Ke Yang, Liangjie Liu, Xiao Mao, Yingying Luo, Yanlin Wang, Guang He, Kai Li, Ying Peng

PMC · DOI: 10.1093/hmg/ddaf030 · 2025-03-28

## TL;DR

This paper identifies two mutations in the CSNK1A1 gene that cause infantile spasms syndrome, a severe childhood epilepsy, and shows how these mutations disrupt a key signaling pathway in brain development.

## Contribution

The study reports de novo mutations in CSNK1A1 linked to infantile spasms syndrome and demonstrates their impact on Wnt/β-catenin signaling.

## Key findings

- Two de novo mutations in CSNK1A1 (p.Ala216Pro and p.His200_Ile201del) are associated with infantile spasms syndrome.
- Both mutations reduce interactions between CSNK1A1 and β-catenin, leading to elevated β-catenin levels and disrupted downstream gene expression.
- Elevated EdU positive rates suggest increased cell proliferation due to Wnt/β-catenin signaling dysregulation.

## Abstract

Infantile spasms syndrome (ISS) is an early-onset epileptic encephalopathy characterized by uncontrollable seizures, severe electroencephalogram abnormalities, as well as delayed cognitive and behavioral development. Independent studies have shown that a variety of genes are involved in ISS and genetic factors play a critical role in its pathogenesis. Here we report two de novo mutations in the casein kinase 1 isoform alpha (CSNK1A1) gene which underlie severe epilepsy with similar clinical presentation in two patients. The identified variants are one missense mutation c.646G > C (p.Ala216Pro, Mut) in NM_001025105.3 and one deletion c.599_604delACATAC (p.His200_Ile201del, Del). In vitro analyses indicated that the Mut causes significant decreases in both mRNA and protein expression, while the Del demonstrated no significant impact on gene expression level. However, co-immunoprecipitation studies have shown that both mutations lead to reduced interactions between CSNK1A1 and β-catenin, resulting in excessive intracellular β-catenin and aberrant expression of several downstream genes. Compared with the wild type (WT), the EdU positive rates in cells transfected with Mut plasmid or Del plasmid were both elevated. Wnt/β-catenin signaling pathway is crucial to neurogenesis. An abnormal rise in β-catenin level has been utilized to generate genetic models for ISS. Our results not only elucidate the role of a novel candidate gene CSNK1A1 in the pathology of ISS, but also provide further evidence for the findings that mediating Wnt/β-catenin signaling is a potential mechanism causing ISS.

## Linked entities

- **Genes:** CSNK1A1 (casein kinase 1 alpha 1) [NCBI Gene 1452], ctnnb1.S (catenin beta 1 S homeolog) [NCBI Gene 380441]
- **Proteins:** ctnnb1.S (catenin beta 1 S homeolog)
- **Diseases:** infantile spasms syndrome (MONDO:0018097)

## Full-text entities

- **Genes:** CSNK1A1 (casein kinase 1 alpha 1) [NCBI Gene 1452] {aka CK1, CK1a, CKIa, HEL-S-77p, HLCDGP1, PRO2975}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}
- **Diseases:** electroencephalogram abnormalities (MESH:D000014), ISS (MESH:D013036), epilepsy (MESH:D004827), seizures (MESH:D012640), epileptic encephalopathy (MESH:D001927)
- **Chemicals:** EdU (MESH:C022811)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.Ala216Pro, p.His200_Ile201del, c.599_604delACATAC, c.646G > C

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12056308/full.md

---
Source: https://tomesphere.com/paper/PMC12056308