# Functional analysis of NtPDX2 in Nicotiana tabacum L. associated with stem development

**Authors:** Li Xu, Yuxin Cui, Jiaxin Xing, Qili Mi, Zhixing Wang, Xujing Wang, Wanli Zeng, Haiying Xiang, Jiarui Jiang, Lele Deng, Kunmiao Wang, Jiangtao Yang, Qian Gao

PMC · DOI: 10.3389/fpls.2025.1547677 · 2025-04-22

## TL;DR

This study explores the role of the NtPDX2 gene in tobacco, showing it affects vitamin B6 levels and plant growth traits like stem thickness and height.

## Contribution

The study is the first to investigate the functional role of NtPDX2 in tobacco and its impact on vitamin B6 and agronomic traits.

## Key findings

- Overexpression of NtPDX2 increased vitamin B6 content in stems by up to 150%.
- Knockout of NtPDX2 reduced vitamin B6 levels to 60% and altered plant height and stem thickness.
- Transcriptome analysis was used to explore the molecular mechanisms of NtPDX2 in tobacco development.

## Abstract

Vitamin B6 is a water-soluble vitamin that is essential for all living organisms in their life activities. Among its forms, pyridoxal 5’-phosphate (PLP) is the primary metabolically active form of Vitamin B6, which usually plays a crucial role in the metabolism of proteins, fatty acids, and carbohydrates. To date, although the molecular functions of genes involved in vitamin B6 biosynthesis, including Pdx1, Pdx2, Pdx3, and Sos4, have been reported in various plants, no studies have yet explored the functions of NtPDX1 and NtPDX2 in tobacco. This study used the Nicotiana tabacum L. as material to clone the CDS sequence of the NtPDXs. Through bioinformatics analysis, we predicted the phylogenetic relationships and functions of these genes; the subcellular localization of NtPDX2 was found to be in the cytoplasmic structures. By conducting both constitutive overexpression and homozygous knockout studies of the NtPDX2, we observed a significant increase in vitamin B6 content in the stem tissues of overexpressing plants (up to 150%), while knockout plants showed a decrease to 60%. This led to changes in agronomic traits such as plant height and stem thickness in tobacco plants. The overexpressing plants exhibited a significant increase in height (100.93 cm) and stem thickness (13.64 cm), whereas the knockout plants were shorter in height (73.10 cm) and had thinner stems (10.83 cm). By integrating transcriptome sequencing technology with molecular biology methods, we aim to elucidate the molecular mechanisms underlying the role of NtPDX2 in tobacco growth and development, thereby providing new genetic resources and a theoretical foundation for the cultivation of new tobacco varieties with superior quality for flue-cured tobacco.

## Linked entities

- **Genes:** PDX1 (pancreatic and duodenal homeobox 1) [NCBI Gene 3651], PDX2 (pyridoxine biosynthesis 2) [NCBI Gene 836175], PDX3 (pyridoxamine-phosphate oxidase PDX3) [NCBI Gene 852323], SOS4 (pfkB-like carbohydrate kinase family protein) [NCBI Gene 833763]
- **Chemicals:** pyridoxal 5’-phosphate (PubChem CID 1051), vitamin B6 (PubChem CID 1054)

## Full-text entities

- **Genes:** Pdx2 [NCBI Gene 107760531]
- **Chemicals:** carbohydrates (MESH:D002241), fatty acids (MESH:D005227), PLP (MESH:D011732), Vitamin B6 (MESH:D025101)
- **Species:** Nicotiana tabacum (American tobacco, species) [taxon 4097]

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12052705/full.md

---
Source: https://tomesphere.com/paper/PMC12052705