# Congenital enteropathy caused by ezrin deficiency

**Authors:** Georg F. Vogel, Katharina M. C. Klee, Arzu Meltem Demir, Dorota Garczarczyk-Asim, Michael W. Hess, Lukas A. Huber, Thomas Müller, Andreas R. Janecke

PMC · DOI: 10.1007/s00439-025-02738-w · Human Genetics · 2025-03-26

## TL;DR

A rare genetic disorder caused by a complete loss of the ezrin protein leads to severe intestinal issues and early death in infants.

## Contribution

First documentation of complete ezrin deficiency in humans and its role in intestinal physiology.

## Key findings

- EZR loss-of-function variant causes intractable diarrhea and failure to thrive in infants.
- Ezrin deficiency leads to structural defects in intestinal cells, including microvillus rarefaction.
- Ezrin is essential for the proper localization of scaffold proteins in intestinal epithelia.

## Abstract

Ezrin, encoded by EZR, is a central module of epithelial polarity and links membrane proteins to the actin cytoskeleton directly or indirectly through scaffold proteins in the epithelium. Ezrin knockout mice fail to thrive and do not survive past weaning. We identified a homozygous EZR loss-of-function (LoF) variant, c.356dup, by exome sequencing in an infant with intractable diarrhea and failure to thrive, who died from septicemia at 5 months of age. The variant localized within a homozygous region of 13.2 Mb in the proband, is consistent with inheritance identical-by-descent from the consanguineous parents, and segregated with disease in the proband’s family. EZR transcript analyses in a heterozygous carrier showed that the variant triggers nonsense-mediated mRNA decay. Homozygous EZR LoF variants have not been reported in public databases. In this study, we generated a Caco-2 EZR knockout cell line to investigate the role of ezrin in human intestinal epithelia. Our analyses used electron and immunofluorescence microscopy to assess structural changes in the knockout cells. We observed significant disorganization of the terminal web region, microvillus rarefaction and abnormal branching. Furthermore, the absence of ezrin resulted in the mislocalization of the ezrin-interacting scaffold protein Na+/H + exchanger regulatory factor-1. In conclusion, this represents the first documentation of complete ezrin deficiency in humans, highlighting the essential and non-redundant functions of the protein in maintaining intestinal physiology.

## Linked entities

- **Genes:** EZR (ezrin) [NCBI Gene 7430]
- **Proteins:** FHL2 (four and a half LIM domains 2)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** EZR (ezrin) [NCBI Gene 7430] {aka CVIL, CVL, HEL-S-105, VIL2}
- **Diseases:** ezrin deficiency (MESH:D007153), diarrhea (MESH:D003967), septicemia (MESH:D018805), Congenital enteropathy (MESH:C538273)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.356dup
- **Cell lines:** Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12033192/full.md

## References

4 references — full list in the complete paper: https://tomesphere.com/paper/PMC12033192/full.md

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Source: https://tomesphere.com/paper/PMC12033192