# Eco-Friendly Biomass Production and Identification of Active Compounds of Paenibacillus polymyxa EB.KN35 with Potent Anti-Fusarium oxysporum Effect

**Authors:** Van Anh Ngo, Anh Dzung Nguyen, San-Lang Wang, Tu Quy Phan, Thi Ha Trang Tran, Dinh Sy Nguyen, Van Bon Nguyen

PMC · DOI: 10.3390/microorganisms13040800 · 2025-03-31

## TL;DR

This study identifies Paenibacillus polymyxa EB.KN35 as a powerful eco-friendly solution for controlling the plant pathogen Fusarium oxysporum using agricultural byproducts.

## Contribution

The novel use of a soybean processing byproduct for efficient biomass production of P. polymyxa EB.KN35 is demonstrated.

## Key findings

- P. polymyxa EB.KN35 achieved high biomass productivity (3.46 × 10¹¹ CFU/mL) in 8 hours using a soybean byproduct.
- The strain secretes plant growth-promoting compounds and volatile compounds that inhibit F. oxysporum.
- Docking studies suggest specific volatile compounds may significantly inhibit the pathogen.

## Abstract

Fusarium oxysporum is a fungal plant pathogen for over 100 agricultural crop species. There are strategies for managing Fusarium wilt, including antagonistic bacteria that offer a promising and sustainable effect. In this work, among the various endophytic bacterial strains, Paenibacillus polymyxa EB.KN35 was selected as the best antifungal strain against F. oxysporum. For eco-friendly biomass production of this bacterium, some agricultural byproducts were tested for cultivation, and a soybean processing byproduct (SPBP) was found to be a suitable C/N source for P. polymyxa EB.KN35 fermentation. The utilization of a 14 L bioreactor system for P. polymyxa EB.KN35 fermentation achieved a high biomass productivity (3.46 × 1011 CFU/mL) in a short time (8 h). In bioactive compound analysis, EB.KN35 was found to be secreting several plant growth-promoting compounds such as GA3, IAA, kinetin, and zeatin (via HPLC) and eleven volatile compounds (via GC–MS). The docking study indicated that some volatile compounds (1, 2, 4, and 9) may play a significant role in inhibiting F. oxysporum. The study results highlight the potential for reusing a soybean processing byproduct as a C/N source for the bioproduction of P. polymyxa EB.KN35 with potential use as a biocontrol agent and biofertilizer.

## Linked entities

- **Chemicals:** GA3 (PubChem CID 6466), IAA (PubChem CID 802), kinetin (PubChem CID 3830), zeatin (PubChem CID 449093)
- **Species:** Fusarium oxysporum (taxon 5507)

## Full-text entities

- **Diseases:** fungal (MESH:D009181), Fusarium wilt (MESH:D060585)
- **Species:** Glycine max (soybean, species) [taxon 3847], Fusarium oxysporum (species) [taxon 5507]

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12029213/full.md

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Source: https://tomesphere.com/paper/PMC12029213