# Centromere Protein F Is a Potential Prognostic Biomarker and Target for Cutaneous Melanoma

**Authors:** Lilu Xie, Kangjie Shen, Chenlu Wei, Jiangying Xuan, Jiayi Huang, Zixu Gao, Ming Ren, Lu Wang, Yu Zhu, Shaoluan Zheng, Chuanyuan Wei, Jianying Gu

PMC · DOI: 10.3390/biomedicines13040792 · Biomedicines · 2025-03-25

## TL;DR

This study shows that high levels of CENPF in melanoma are linked to worse outcomes and that targeting CENPF could be a new treatment approach.

## Contribution

CENPF is identified as a novel prognostic biomarker and therapeutic target in cutaneous melanoma.

## Key findings

- CENPF is significantly upregulated in melanoma tissues and linked to poor survival and advanced disease features.
- CENPF knockdown reduces tumor growth and metastasis in vitro and in vivo.
- CENPF is regulated by E2F3 and promotes tumor progression via cell cycle and P53 pathway modulation.

## Abstract

Background/Objectives: Cutaneous melanoma (CM) is a highly aggressive malignancy with poor prognosis, necessitating novel biomarkers and therapeutic targets. Centromere protein F (CENPF), a mitotic regulator, has been implicated in tumor progression, but its role in melanoma remains unclear. This study aimed to investigate the clinical significance, biological function, and regulatory mechanisms of CENPF in melanoma. Methods: Public melanoma datasets (GSE46517, GSE3189, and GSE7553) were re-analyzed to identify differentially expressed genes (DEGs). CENPF expression was validated in clinical samples (n = 128), melanoma cell lines, and xenograft models. Functional assays (EdU, CCK-8, colony formation, wound healing, transwell, and flow cytometry) and bioinformatics analyses (GO, KEGG, GSEA, and SCENIC) were performed to assess proliferation, apoptosis, metastasis, and regulatory pathways. In vivo tumorigenesis and metastasis were evaluated in BALB/c nude mice. Results: CENPF was significantly upregulated in melanoma tissues and cell lines compared to controls (p < 0.05). High CENPF expression correlated with advanced Clark level (p = 0.006), ulceration (p = 0.04), and poor overall survival (p = 0.005). Knockdown of CENPF suppressed melanoma cell proliferation, migration, and invasion in vitro, while inducing G2/M phase arrest and apoptosis. In vivo, CENPF silencing reduced tumor growth and lung metastasis. Mechanistically, CENPF was transcriptionally activated by E2F3, and the E2F3-CENPF axis promoted cell cycle progression via G2/M checkpoint activation and P53 pathway suppression. Conclusions: CENPF serves as a prognostic biomarker and therapeutic target in melanoma. Its upregulation drives tumor progression through cell cycle dysregulation and immune evasion, while targeting the E2F3-CENPF axis may offer a novel strategy for melanoma treatment. These findings provide critical insights into melanoma pathogenesis and potential clinical applications.

## Linked entities

- **Genes:** CENPF (centromere protein F) [NCBI Gene 1063], E2F3 (E2F transcription factor 3) [NCBI Gene 1871], TP53 (tumor protein p53) [NCBI Gene 7157]
- **Diseases:** cutaneous melanoma (MONDO:0005012), melanoma (MONDO:0005105)

## Full-text entities

- **Genes:** Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], E2f3 (E2F transcription factor 3) [NCBI Gene 13557] {aka E2F3b, E2f3a}, Cenpf (centromere protein F) [NCBI Gene 108000] {aka 6530404A22Rik, CENF, Lek1, PRO1779, mitosin}
- **Diseases:** lung metastasis (MESH:D009362), tumorigenesis (MESH:D063646), melanoma (MESH:D008545), malignancy (MESH:D009369), CM (MESH:C562393)
- **Chemicals:** EdU (MESH:C022811)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12024980/full.md

## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12024980/full.md

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Source: https://tomesphere.com/paper/PMC12024980