# A Lightweight Machine Learning Model for High Precision Gastrointestinal Stromal Tumors Identification

**Authors:** Xin Sun, Xiwen Mo, Jing Shi, Xinran Zhou, Yanqing Niu, Xiao-Dong Zhang, Man Li, Yonghui Li

PMC · DOI: 10.3390/bioengineering12040381 · Bioengineering · 2025-04-03

## TL;DR

A lightweight machine learning model accurately identifies gastrointestinal stromal tumors from ultrasound images, outperforming human experts.

## Contribution

A lightweight CNN model is proposed for high-precision GIST classification using EUS images, emphasizing simplicity and performance.

## Key findings

- The model achieved 96.2% average validation accuracy with 5-fold cross-validation.
- It outperformed endoscopists with 97.7% sensitivity and 94.7% specificity.
- Lightweight models with fewer parameters were found preferable to deeper models based on Occam’s razor.

## Abstract

Gastrointestinal stromal tumors (GISTs), which usually develop with a significant malignant potential, are a serious challenge in stromal health. With Endoscopic ultrasound (EUS), GISTs can appear similar to other tumors. This study introduces a lightweight convolutional neural network model optimized for the classification of GISTs and leiomyomas using EUS images only. Models are constructed based on a dataset that comprises 13277 augmented grayscale images derived from 703 patients, ensuring a balanced representation between GIST and leiomyoma cases. The optimized model architecture includes seven convolutional units followed by fully connected layers. After being trained and evaluated with a 5-fold cross-validation, the optimized model achieves an average validation accuracy of 96.2%. The model achieved a sensitivity, specificity, positive predictive value, and negative predictive value of 97.7%, 94.7%, 94.6%, and 97.7%, respectively, and significantly outperformed endoscopists’ assessments. The study highlights the model’s robustness and consistency. Our results suggest that instead of using developed deep models with fine-tuning, lightweight models with their simpler designs may grasp the essence and drop speckle noise. A lightweight model as a hypothesis with fewer model parameters is preferable to a deeper model with 10 times the model parameters according to Occam’s razor statement.

## Linked entities

- **Diseases:** gastrointestinal stromal tumors (MONDO:0011719)

## Full-text entities

- **Diseases:** GIST (MESH:D046152), leiomyoma (MESH:D007889), tumors (MESH:D009369)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

29 references — full list in the complete paper: https://tomesphere.com/paper/PMC12024531/full.md

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Source: https://tomesphere.com/paper/PMC12024531