# Identification of novel compound heterozygous variants in the PEX10 gene in a Han-Chinese family with PEX10-related peroxisome biogenesis disorders

**Authors:** Xiangjun Huang, Xinyue Deng, Xiong Deng, Hongbo Xu, Hao Deng, Lamei Yuan

PMC · DOI: 10.1371/journal.pone.0322137 · PLOS One · 2025-04-23

## TL;DR

Researchers found new genetic variants in the PEX10 gene linked to a rare inherited disorder affecting peroxisome function in a Chinese family.

## Contribution

The study identifies novel compound heterozygous variants in PEX10, expanding the genetic spectrum of PBD6B.

## Key findings

- Compound heterozygous variants c.113-2A>G and c.890T>C were found in PEX10 in a Han-Chinese family.
- The splicing variant c.113-2A>G caused exon skipping and in-frame deletions.
- The findings provide insights into PBD6B causation and improve genetic diagnosis.

## Abstract

The peroxisome biogenesis disorders (PBDs) are a group of rare inherited autosomal recessive diseases characterized by motor and cognitive neurological dysfunction, hypotonia, seizures, feeding difficulties, retinopathy, sensorineural hearing loss, hepatic and renal abnormalities, and chondrodysplasia punctata of long bones, and the clinical expression is variable. Exome sequencing and Sanger sequencing were used to identify the genetic defect for PBDs in a two-generation non-consanguineous Han-Chinese pedigree. Compound heterozygous variants, a novel splicing variant c.113-2A>G and a reported substitution c.890T>C (p.Leu297Pro), in the peroxisomal biogenesis factor 10 gene (PEX10) were detected. The splicing variant c.113-2A>G led to a canonical splice acceptor site inactivation, exon 2 skipping, and in-frame deletions (p.Ala39_Gly65del). The three patients had similar phenotypes of milder PBDs, which were further genetically determined as PBD6B. The findings extend the PEX10 variant spectrum and may provide new insights into PBDs causation and diagnosis, with implications for genetic counseling and clinical management.

## Linked entities

- **Genes:** PEX10 (peroxisomal biogenesis factor 10) [NCBI Gene 5192]
- **Diseases:** PBD6B (MONDO:0013937)

## Full-text entities

- **Genes:** PEX10 (peroxisomal biogenesis factor 10) [NCBI Gene 5192] {aka NALD, PBD6A, PBD6B, RNF69}
- **Diseases:** PBDs (MESH:C536664), seizures (MESH:D012640), sensorineural hearing loss (MESH:D006319), retinopathy (MESH:D058437), hypotonia (MESH:D009123), PBD6B. (OMIM:614871), genetic defect (MESH:D030342), neurological dysfunction (MESH:D009461), hepatic and renal abnormalities (MESH:D000014), chondrodysplasia punctata of long bones (MESH:D002806)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.Leu297Pro, p.Ala39_Gly65del, c.113-2A>G

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12017559/full.md

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12017559/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12017559/full.md

---
Source: https://tomesphere.com/paper/PMC12017559